Added GUANO metadata

.gitignore

@@ -1 +1,3 @@
-public/storage
+public/storage
+node_modules
+public/test

public/contact/index.php

@@ -17,24 +17,25 @@ include("$root/analytics/matomo.php");
 <?php include("$root/menu.php"); ?>
 <?php include("$root/header.php"); ?>
 <section>
+    <h2>Contact</h2>
     <article>
         <form action="sendmail.php" method="post">
-            <label for="fname">First Name</label>
+            <label for="fname">First Name*</label>
             <input type="text" id="fname" name="firstname" placeholder="Your first name.." required><br>
         
-            <label for="lname">Last Name</label>
+            <label for="lname">Last Name*</label>
             <input type="text" id="lname" name="lastname" placeholder="Your last name.." required><br>
         
-            <label for="email">Email</label>
+            <label for="email">Email*</label>
             <input type="email" id="email" name="email" placeholder="Your email.." required><br>
 
             <label for="website">Website</label>
             <input type="url" id="website" name="website" placeholder="Your website.."><br>
 
-            <label for="subject">Subject</label>
+            <label for="subject">Subject*</label>
             <input type="text" id="subject" name="subject" placeholder="Your subject.." required><br>
         
-            <label for="message">Message</label>
+            <label for="message">Message*</label>
             <textarea id="message" name="message" placeholder="Write something.." required style="height:200px"></textarea><br>
         
             <input type="submit" value="Submit"><input type="reset" value="Reset">

public/contact/sendmail.php

@@ -50,14 +50,14 @@ try {
     //Server settings
     // $mail->SMTPDebug = SMTP::DEBUG_SERVER;                      //Enable verbose debug output
     $mail->isSMTP();                                             //Send using SMTP
-    $mail->Timeout    = 60;
+    $mail->Timeout = 60;
     $mail->SMTPKeepAlive = true;
-    $mail->Host       = 'smtp.gmail.com';                     //Set the SMTP server to send through
+    $mail->Host = 'smtp.gmail.com';                     //Set the SMTP server to send through
-    $mail->SMTPAuth   = true;                                   //Enable SMTP authentication
+    $mail->SMTPAuth = true;                                   //Enable SMTP authentication
-    $mail->Username   = 'samulus.ortion@gmail.com';                     //SMTP username
+    $mail->Username = 'samulus.ortion@gmail.com';                     //SMTP username
-    $mail->Password   = 'CEkvk6vjP28vhCy';                               //SMTP password
+    $mail->Password = 'CEkvk6vjP28vhCy';                               //SMTP password
     $mail->SMTPSecure = PHPMailer::ENCRYPTION_STARTTLS;         //Enable TLS encryption; `PHPMailer::ENCRYPTION_SMTPS` encouraged
-    $mail->Port       = 587;                                  //TCP port to connect to, use 465 for `PHPMailer::ENCRYPTION_SMTPS` above
+    $mail->Port = 587;                                  //TCP port to connect to, use 465 for `PHPMailer::ENCRYPTION_SMTPS` above
     $mail->CharSet = "UTF-8";
     $mail->Encoding = 'base64';
     //Recipients
@@ -75,7 +75,8 @@ try {
     //Content
     //$mail->isHTML(true);                                  //Set email format to HTML
     $mail->Subject = $subject;
-    $mail->Body    = $message;
+    $mail->Body = $message;
+    $mail->Body .= "\nSended by $fname $lname <$email>\n";
     // $mail->AltBody = 'This is the body in plain text for non-HTML mail clients';
 
     $mail->send();

public/explore/guano/index.php

@@ -0,0 +1,73 @@
+<?php 
+session_start();
+ini_set('display_errors', 1);
+ini_set('display_startup_errors', 1);
+error_reporting(E_ALL);
+$root = realpath($_SERVER["DOCUMENT_ROOT"]);
+require "$root/database/credentials.php";
+// Connect the database
+try {
+	$db = new PDO("mysql:host=$host;dbname=$database;charset=utf8", 
+		$user, 
+		$password, 
+		array(PDO::ATTR_ERRMODE => PDO::ERRMODE_EXCEPTION
+		));
+} catch (Exception $e) {
+	die("Error : ".$e->getMessage());
+}
+if (isset($_GET['record'])) {
+    $req = $db->prepare('SELECT * FROM records WHERE id=:id');
+    $req->execute(array(
+        "id"=>$_GET['record']
+    ));
+} else {
+    $req = $db->prepare('SELECT * FROM records ORDER BY date DESC LIMIT 1');
+    $req->execute();
+}
+if ($data = $req->fetch()) {
+
+} else {
+    $_SESSION['error_msg'] = "Can't fetch data.";
+}
+?>
+<!DOCTYPE html>
+<html lang="en">
+<head>
+    <meta charset="UTF-8">
+    <meta http-equiv="X-UA-Compatible" content="IE=edge">
+    <meta name="viewport" content="width=device-width, initial-scale=1.0">
+    <title>GUANO | Chiro-Canto</title>
+    <link rel="stylesheet" type="text/css" href="/styles/style.css">
+</head>
+<?php 
+include("$root/analytics/matomo.php");
+?>
+<body>
+<?php include("$root/menu.php"); ?>
+<?php include("$root/header.php"); ?>
+<section>
+    <h2>GUANO v1.0</h2>
+    <?=isset($_SESSION['error_msg']) and $_SESSION['error_msg'] != "" ? '<div class="error">'.$_SESSION['error_msg'].'</div>' : "";?>
+    <a href="/articles">about GUANO</a>
+    <article id="guano">
+GUANO|Version:  1.0<br><br>
+
+Original Filename:  <?=$data['file_name']?><br>
+Timestamp:  <?=$data['date']?> <?=$data['time']?><br>
+Species Auto ID:    None <br>
+Species Manual ID:  <em><?=$data['species']?> <?=$data['subspecies']?></em><br>
+Tags:   None <br>
+Note:   <?=(isset($data['remarks']) and $data['remarks'] != "") ? $data['remarks'] : "None"?><br>
+TE:     <?=(isset($data['time_expansion']) and $data['time_expansion'] != 0) ? $data['time_expansion'] : "Not defined"?><br>
+Samplerate:     <?=(isset($data['sample_rate']) and $data['sample_rate'] != 0) ? $data['sample_rate'] : "Not defined"?><br>
+Length:     <?=(isset($data['duration']) and $data['duration'] != "") ? $data['duration'] : "Not defined"?><br>
+    </article>
+    <button title="Copy to clipboard" onclick="clipboard_copy()">
+    <img src="/media/icons/copy.png" alt="clipboard copy">
+    </button>
+</section>
+<?php include("$root/footer.php"); ?>
+</body>
+<script src="/scripts/script.js"></script>
+</html>
+

public/explore/list/index.php

@@ -4,7 +4,6 @@ ini_set('display_startup_errors', 1);
 error_reporting(E_ALL);
 session_start();
 $root = realpath($_SERVER["DOCUMENT_ROOT"]);
-$version = "1.0";
 require "$root/database/credentials.php";
 // Connect the database
 try {
@@ -66,7 +65,8 @@ $result = $req->fetchAll();
                             <td>
                                 <a href="/explore/spectrograms/?record=<?=$row['id']?>"><?=$row['file_name']?></a>
                                 <a href="/storage/records/<?=$row['file_name']?>" title="Download file"><i class="fa fa-download"></i></a>
-                                <a href="/larynx/?record=<?=$row['id']?>"><img src="/media/icons/wave.svg" alt="spectro analysis" title="Open with Larynx"></a>
+                                <a href="/larynx/?record=<?=$row['id']?>" title="Open with Larynx"><img src="/media/icons/wave.svg" alt="spectro analysis"></a>
+                                <a href="/explore/guano?record=<?=$row['id']?>" title="See GUANO metadata"><img src="/media/icons/data.png" alt="database search"></a>
                             </td>
                             <td><?=$username?></td>
                             <td><?=$row['license']?></td>

public/gallery/gallery.php

@@ -0,0 +1,34 @@
+<?php
+ini_set('display_errors', 1);
+ini_set('display_startup_errors', 1);
+error_reporting(E_ALL);
+$root = realpath($_SERVER["DOCUMENT_ROOT"]);
+require "$root/database/credentials.php";
+try {
+    $db = new PDO("mysql:host=$host;dbname=$database;charset=utf8", 
+        $user, 
+        $password, 
+        array(PDO::ATTR_ERRMODE => PDO::ERRMODE_EXCEPTION
+        ));
+} catch (Exception $e) {
+    die("Error : ".$e->getMessage());
+}
+$req = $db->prepare('SELECT * FROM images');
+$req->execute();
+$result = $req->fetchAll();
+
+?>
+<ul class="images">
+<?php
+    foreach ($result as $row) {
+        ?>
+        <li>
+            <div><img src="/storage/images/<?=$row['file_name']?>" alt="<?=$row['species']?>"></div>    
+        </li>
+        <?php
+    }
+?>
+</ul>
+<a href="?option=upload">Upload Image</a>
+<script src="scripts/gallery.js"></script>
+<?php

public/gallery/index.php

@@ -0,0 +1,44 @@
+<?php
+ini_set('display_errors', 1);
+ini_set('display_startup_errors', 1);
+error_reporting(E_ALL);
+session_start();
+$root = realpath($_SERVER["DOCUMENT_ROOT"]);
+?>
+<!DOCTYPE html>
+<html lang="en">
+<head>
+    <meta charset="UTF-8">
+    <meta http-equiv="X-UA-Compatible" content="IE=edge">
+    <meta name="viewport" content="width=device-width, initial-scale=1.0">
+    <title>Gallery | Chiro - Canto</title>
+    <link rel="stylesheet" type="text/css" href="/styles/style.css">
+</head>
+<?php 
+include("$root/analytics/matomo.php");
+?>
+<body>
+    <?php include("$root/menu.php");?>
+    <?php include("$root/header.php");?>
+    <section>
+        <h2>Gallery</h2>
+        <?=$_SESSION['error_msg']?>
+        <?=isset($_SESSION['error_msg']) and $_SESSION['error_msg'] != "" ? '<div class="error">'.$_SESSION['error_msg'].'</div>' : ""?>
+        <?php
+        $option = isset($_GET['option']) ? $_GET['option'] : "";
+        switch ($option) {
+            case 'upload':
+                include('upload.php');
+                break;
+            // case 'gallery':
+            //     include('gallery.php');
+            //     break;
+            default:
+                include('gallery.php');
+        }
+        ?>
+    </section>
+    <?php include("$root/footer.php");?>
+</body>
+<script src="/scripts/script.js"></script>
+</html>

public/gallery/scripts/gallery.js

@@ -0,0 +1,10 @@
+images = document.getElementsByTagName('img');
+for (img of images) {
+    img.addEventListener('click', function() {
+        if (img.classList.contains("fullscreen")) {
+            img.classList.remove('fullscreen');
+        } else {
+            img.classList.add('fullscreen');
+        }
+    });
+}

public/gallery/upload.php

@@ -0,0 +1,74 @@
+<?php
+ini_set('display_errors', 1);
+ini_set('display_startup_errors', 1);
+error_reporting(E_ALL);
+$root = realpath($_SERVER["DOCUMENT_ROOT"]);
+function form() {
+?>
+<form action="upload.php" method="post" enctype="multipart/form-data">
+    <label for="file">Image*</label><br>
+    <input type="file" name="file" value="file" required><br>
+    <label for="species">Species</label>
+    <input type="text" name="species" id="species">
+    <input type="submit" name="submit" value="submit">
+</form>
+<?php
+}
+
+function db_entry($species, $filename) {
+    session_start();
+    global $root;
+    $location = $root."/storage/images/";
+    require "$root/database/credentials.php";
+    // Connect the database
+    try {
+        $db = new PDO("mysql:host=$host;dbname=$database;charset=utf8", 
+            $user, 
+            $password, 
+            array(PDO::ATTR_ERRMODE => PDO::ERRMODE_EXCEPTION
+            ));
+    } catch (Exception $e) {
+        die("Error : ".$e->getMessage());
+    }
+    if (isset($_SESSION['username'])) {
+        $req = $db->prepare('SELECT id FROM authors WHERE username=:username');
+        $req->execute(array(
+            "username"=>$_SESSION['username']
+        ));
+        if ($data = $req->fetch()) {
+            $author_id = $data['id'];
+        }
+    } else {
+        $_SESSION['error_msg'] .= "You need to be logged in to upload images.";
+        header("Location: /auth/login");
+    }
+    $req = $db->prepare('INSERT INTO images (species, file_name, author_id, entry_date) VALUES (:species, :file_name, :author_id, now())');
+    $req->execute(array(
+        "species"=>$species,
+        "file_name"=>$filename,
+        "author_id"=>$author_id
+    ));
+}
+
+
+$_SESSION['error_msg'] = "";
+if(isset($_POST['submit'])){
+    $location = $root."/storage/images/";
+    $name = $_FILES['file']['name'];  
+    $temp_name = $_FILES['file']['tmp_name'];
+    if(isset($name) and !empty($name)){
+        $location = "$root/storage/images/";      
+        if(move_uploaded_file($temp_name, $location.$name)){
+            echo 'File uploaded successfully';
+            db_entry(isset($_POST['species']) ? $_POST['species'] : "", $name);
+            header('Location: /gallery');
+        } else {
+            echo "Can't move your file.";
+        }
+    } else {
+        $_SESSION['error_msg'] .= 'You should select a file to upload !!';
+    }
+} else {
+    form();
+}
+?>

public/larynx/index.php

@@ -46,6 +46,9 @@ include("$root/analytics/matomo.php");
     <section>
         <h2>Larynx</h2>
         <p>A web tool for bat sound analysis</p>
+        <a href="#larynx">
+            <div class="arrow bounce"></div>
+        </a>
     </section>
     <div id="larynx">
         <h2>Larynx v<?=$version?></h2>
@@ -60,7 +63,7 @@ include("$root/analytics/matomo.php");
                 <div class="measures">
                     T:
                     <span id="cursor-time"></span>
-                    ms     F:
+                    s     F:
                     <span id="cursor-frequency"></span>
                     kHz
                 </div>
@@ -71,6 +74,10 @@ include("$root/analytics/matomo.php");
                 </div>
             </div>
             <p class="license"><?=$data['license']?> <?=$data['recordist_name']?></p>
+            <div class="settings">
+                <input type="checkbox" name="exp_x10" id="exp_x10">
+                <label for="exp_x10">exp x10</label>
+            </div>
         </div>
     </div>
     <?php include("$root/footer.php");?>

public/larynx/scripts/spectro.js

@@ -66,8 +66,12 @@ function measure(x, y) {
     y = -(-(-y + spectro_y) - spectro_height);
     let t = (x / spectro_width) * audio.duration;
     let f = (y / spectro_height) * 24;
-    document.getElementById('cursor-time').innerHTML = Math.round(t);
+    let frequency_factor = 1;
-    document.getElementById('cursor-frequency').innerHTML = Math.round(f);
+    if (document.getElementById('exp_x10').checked) {
+        frequency_factor = 10;
+    }
+    document.getElementById('cursor-time').innerHTML = Math.round(t / frequency_factor * 100) / 100;
+    document.getElementById('cursor-frequency').innerHTML = Math.round(f * frequency_factor * 100) / 100;
 }
 
 let spectro = document.getElementById("wave-spectrogram");

public/media/icons/bottom_arrow.svg

@@ -0,0 +1,61 @@
+<?xml version="1.0" encoding="UTF-8" standalone="no"?>
+<svg
+   xmlns:dc="http://purl.org/dc/elements/1.1/"
+   xmlns:cc="http://creativecommons.org/ns#"
+   xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#"
+   xmlns:svg="http://www.w3.org/2000/svg"
+   xmlns="http://www.w3.org/2000/svg"
+   xmlns:sodipodi="http://sodipodi.sourceforge.net/DTD/sodipodi-0.dtd"
+   xmlns:inkscape="http://www.inkscape.org/namespaces/inkscape"
+   width="48"
+   height="48"
+   viewBox="0 0 12.7 12.7"
+   version="1.1"
+   id="svg8"
+   inkscape:version="1.0.2 (e86c870879, 2021-01-15)"
+   sodipodi:docname="bottom_arrow.svg">
+  <defs
+     id="defs2" />
+  <sodipodi:namedview
+     id="base"
+     pagecolor="#ffffff"
+     bordercolor="#666666"
+     borderopacity="1.0"
+     inkscape:pageopacity="0.0"
+     inkscape:pageshadow="2"
+     inkscape:zoom="6.2964066"
+     inkscape:cx="2.1027989"
+     inkscape:cy="28.041802"
+     inkscape:document-units="mm"
+     inkscape:current-layer="layer1"
+     inkscape:document-rotation="0"
+     showgrid="false"
+     units="px"
+     inkscape:window-width="1530"
+     inkscape:window-height="1011"
+     inkscape:window-x="50"
+     inkscape:window-y="32"
+     inkscape:window-maximized="0" />
+  <metadata
+     id="metadata5">
+    <rdf:RDF>
+      <cc:Work
+         rdf:about="">
+        <dc:format>image/svg+xml</dc:format>
+        <dc:type
+           rdf:resource="http://purl.org/dc/dcmitype/StillImage" />
+        <dc:title />
+      </cc:Work>
+    </rdf:RDF>
+  </metadata>
+  <g
+     inkscape:label="Layer 1"
+     inkscape:groupmode="layer"
+     id="layer1">
+    <path
+       style="fill:none;stroke:#000000;stroke-width:1.96589;stroke-linecap:butt;stroke-linejoin:miter;stroke-miterlimit:4;stroke-dasharray:none;stroke-opacity:1"
+       d="M 0.49104367,4.514826 6.3991297,11.112516 12.202494,4.4855177"
+       id="path833"
+       sodipodi:nodetypes="ccc" />
+  </g>
+</svg>

public/media/icons/style.css

@@ -0,0 +1,464 @@
+* {
+    align-self: baseline;
+}
+
+body {
+    margin: 0;
+    background-color: white;
+}
+
+header {
+    text-align: right;
+    padding: 0;
+}
+
+header a {
+    text-decoration: none;
+    color: black;
+}
+
+nav,
+nav .container {
+    padding: 0;
+    margin: 0;
+}
+
+header .container,
+nav .container {
+    display: flex;
+    justify-content: space-between;
+}
+
+header h1 {
+    font-size: 4em;
+    padding: 0;
+    margin: 0;
+}
+
+img.banner {
+    width: 100%;
+    height: auto;
+}
+
+section {
+    padding: 1em;
+    min-height: 100vh;
+    width: 50vw;
+    text-align: left;
+    margin: auto;
+}
+
+article {
+    width: 50vw;
+    text-align: left;
+    margin: auto;
+}
+
+article h1 {
+    font-size: 5em;
+}
+
+footer {
+    color: white;
+    text-align: center;
+    background-color: rgba(0, 0, 0, 0.9);
+    padding: 1em;
+}
+
+footer a {
+    text-decoration: none;
+}
+
+
+footer img {
+    height: 1em;
+}
+
+label {
+    width: 40em;
+    display: inline;
+}
+
+label span.info {
+    display: none;
+}
+
+label:hover span.info {
+    display: inline-block;
+    position: relative;
+    background: yellow;
+    padding: 0.5em;
+    border-radius: 5px;
+}
+
+input {
+    margin: 0.1em;
+}
+
+/* Style inputs with type="text", select elements and textareas */
+input[type=text],
+input[type=email],
+input[type=url],
+input[type=password],
+input[type=number],
+input[type=date],
+input[type=time],
+select,
+textarea {
+    width: 100%;
+    /* Full width */
+    padding: 12px;
+    /* Some padding */
+    border: 1px solid #ccc;
+    /* Gray border */
+    border-radius: 4px;
+    /* Rounded borders */
+    box-sizing: border-box;
+    /* Make sure that padding and width stays in place */
+    margin-top: 6px;
+    /* Add a top margin */
+    margin-bottom: 16px;
+    /* Bottom margin */
+    resize: vertical
+        /* Allow the user to vertically resize the textarea (not horizontally) */
+}
+
+/* Style the submit button with a specific background color etc */
+input[type=submit] {
+    background-color: #4CAF50;
+    color: white;
+    padding: 12px 20px;
+    border: none;
+    border-radius: 4px;
+    cursor: pointer;
+}
+
+input[type=reset] {
+    background-color: #af4c4c;
+    color: white;
+    padding: 12px 20px;
+    border: none;
+    border-radius: 4px;
+    cursor: pointer;
+}
+
+/* When moving the mouse over the submit button, add a darker green color */
+input[type=submit]:hover {
+    background-color: #45a049;
+}
+
+/* When moving the mouse over the reset button, add a darker red color */
+input[type=reset]:hover {
+    background-color: #923737;
+}
+
+
+/* Add a background color and some padding around the form */
+.container {
+    border-radius: 5px;
+    background-color: #f2f2f2;
+    padding: 1em;
+}
+
+nav {
+    border-bottom: 1px solid black;
+    position: flex;
+    display: block;
+    width: 100%;
+    background-color: white;
+    z-index: 10;
+    overflow: hidden;
+    overflow-wrap: break-word;
+}
+
+nav div {
+    padding: 1em;
+}
+
+nav.dark-theme {
+    background: black;
+}
+
+nav.dark-theme ul li {
+    color: white;
+}
+
+nav ul {
+    display: flex;
+    flex-direction: row;
+}
+
+nav ul a {
+    text-decoration: none;
+}
+
+nav ul li {
+    list-style: none;
+    color: black;
+    margin: 0.5em;
+}
+
+iframe::parent {
+    padding: 0;
+    margin: 0;
+}
+
+iframe {
+    width: 100%;
+    height: 750px;
+}
+
+#previewFrame {
+    width: 300px;
+    height: 200px;
+    resize: both;
+    zoom: 0.2;
+    -moz-transform: scale(0.5);
+    -moz-transform-origin: 0 0;
+    -o-transform: scale(0.5);
+    -o-transform-origin: 0 0;
+    -webkit-transform: scale(0.5);
+    -webkit-transform-origin: 0 0;
+}
+
+iframe html body {
+    font-size: 0.1em;
+}
+
+.container {
+    display: flex;
+    padding-top: 0;
+    padding-bottom: 0;
+}
+
+.container.row {
+    flex-direction: row;
+}
+
+.container.column {
+    flex-direction: column;
+}
+
+h3,
+p {
+    padding: 1em;
+    width: auto;
+}
+
+p.large {
+    width: auto;
+}
+
+table {
+    border-radius: 5px;
+    width: 100%;
+    border-collapse: collapse;
+}
+
+td,
+th {
+    border: 1px solid #dddddd;
+    text-align: left;
+    padding: 0.5em;
+}
+
+tr:nth-child(even) {
+    background-color: #dddddd;
+}
+
+table a {
+    text-decoration: none;
+    color: black;
+}
+
+table a:hover {
+    font-style: italic;
+}
+
+#searchbar {
+    display: flex;
+    flex-direction: row;
+    align-self: right;
+}
+
+ul.breadcrumb {
+    display: flex;
+    flex-basis: row;
+}
+
+ul.breadcrumb li {
+    list-style: url("/media/icons/arrow.svg");
+    margin-left: 2em;
+}
+
+ul.breadcrumb li.active {
+    font-weight: bold;
+}
+
+div.coordinates {
+    display: flex;
+    flex-direction: row;
+}
+
+div.coordinates input[type="text"] {
+    width: 25em;
+}
+
+.sci-name {
+    font-style: italic;
+}
+
+.error {
+    border: solid red;
+    border-radius: 5px;
+    padding: 0.5em;
+    background-color: rgba(255, 0, 0, 0.4)
+}
+
+.sound {
+    background-color: rgba(0, 255, 0, 0.5);
+    padding: 1em;
+    border-radius: 5px;
+    overflow: auto;
+}
+
+#spectrogram {
+    width: 100%;
+    max-width: 75vh;
+}
+
+button img {
+    max-height: 1em;
+}
+
+form#url-form {
+    display: none;
+    position: fixed;
+    top: 50%;
+    left: 35%;
+    width: 15em;
+    z-index: 1;
+    background-color: white;
+    padding: 1em;
+    border-radius: 5px;
+    border: 1px solid #ccc;
+}
+
+table#replies td {
+    background-color: white;
+}
+
+
+#larynx {
+    background-color: rgba(0, 0, 0, 0.8);
+    width: auto;
+    min-height: 100vh;
+    margin: 0;
+
+    color: white;
+    padding: 1em;
+}
+
+#larynx h2 {
+    text-align: center;
+}
+
+#larynx {
+    text-align: center;
+}
+
+#larynx .license {
+    text-align: left;
+}
+
+#larynx canvas {
+    width: 100vw;
+    position: relative;
+    left: 0;
+}
+
+#larynx .container {
+    background: transparent;
+    display: flex;
+    justify-content: space-between;
+}
+
+#larynx .settings {
+    display: flex;
+}
+
+#larynx .settings input, #larynx .settings label {
+    width: auto;
+    padding: 0em 1em;
+}
+table {
+    max-width: 100vw;
+}
+
+table#list {
+    position: absolute;
+    left: 0;
+}
+
+table img {
+    height: 1em;
+}
+
+.images img {
+    max-height: 10em;
+}
+
+.images li {
+    list-style: none;
+}
+
+.images .fullscreen {
+    display: block;
+    position: fixed;
+    /*top: 10%;*/
+    bottom: 0;
+    left: 50%;
+    max-width: 100vw;
+    max-height: 100vh;
+    transform: translate(-50%);
+}
+.images .fullscreen::parent {
+  background: rgba(0, 0, 0, 0.5);
+  backdrop-filter: blur(9px);
+  position: fixed;
+  bottom: 0;
+  right: 0;
+  left: 0;
+  top: 0;
+}
+
+.arrow {
+  position: relative;
+  bottom: 0;
+  left: 50%;
+  margin-left:-20px;
+  width: 40px;
+  height: 40px;
+  background-image: url(/media/icons/bottom_arrow.svg);
+  background-size: contain;
+}
+
+.bounce {
+  animation: bounce 2s infinite;
+}
+
+@keyframes bounce {
+    0%, 20%, 50%, 100% {
+        transform: translateY(0);
+    }
+    40% {
+        transform: translateY(-30px);
+    }
+    60% {
+        transform: translateY(-15px);
+    }
+}
+
+article.guano {
+    font-family: "Sudo";
+}

public/scripts/script.js

@@ -49,4 +49,31 @@ win.onscroll = function() {
 
 // function hidePreview() {
 //     iframe.style.display = "none";
-// }
+// }
+
+var coll = document.getElementsByClassName("collapsible");
+var i;
+
+for (i = 0; i < coll.length; i++) {
+    coll[i].addEventListener("click", function() {
+        this.classList.toggle("collapsed");
+        var content = this.nextElementSibling;
+        if (content.style.display === "block") {
+            content.style.display = "none";
+        } else {
+            content.style.display = "block";
+        }
+    });
+}
+
+
+function clipboard_copy() {
+    /* Get the text field */
+    var copyText = document.getElementById("guano");
+    var r = document.createRange();
+    r.selectNode(copyText);
+    window.getSelection().removeAllRanges();
+    window.getSelection().addRange(r);
+    document.execCommand('copy');
+    window.getSelection().removeAllRanges();
+}

public/styles/style.css

@@ -167,6 +167,8 @@ nav {
     width: 100%;
     background-color: white;
     z-index: 10;
+    overflow: hidden;
+    overflow-wrap: break-word;
 }
 
 nav div {
@@ -381,6 +383,14 @@ table#replies td {
     justify-content: space-between;
 }
 
+#larynx .settings {
+    display: flex;
+}
+
+#larynx .settings input, #larynx .settings label {
+    width: auto;
+    padding: 0em 1em;
+}
 table {
     max-width: 100vw;
 }
@@ -392,4 +402,140 @@ table#list {
 
 table img {
     height: 1em;
+}
+
+.images img {
+    max-height: 10em;
+}
+
+.images li {
+    list-style: none;
+}
+
+.images .fullscreen {
+    display: block;
+    position: fixed;
+    /*top: 10%;*/
+    bottom: 0;
+    left: 50%;
+    max-width: 100vw;
+    max-height: 100vh;
+    transform: translate(-50%);
+}
+.images .fullscreen::parent {
+  background: rgba(0, 0, 0, 0.5);
+  backdrop-filter: blur(9px);
+  position: fixed;
+  bottom: 0;
+  right: 0;
+  left: 0;
+  top: 0;
+}
+
+.arrow {
+  position: relative;
+  bottom: 0;
+  left: 50%;
+  margin-left:-20px;
+  width: 40px;
+  height: 40px;
+  background-image: url(/media/icons/bottom_arrow.svg);
+  background-size: contain;
+}
+
+.bounce {
+  animation: bounce 2s infinite;
+}
+
+@keyframes bounce {
+    0%, 20%, 50%, 100% {
+        transform: translateY(0);
+    }
+    40% {
+        transform: translateY(-30px);
+    }
+    60% {
+        transform: translateY(-15px);
+    }
+}
+
+article#guano {
+    font-family: "Consolas";
+    background-color: lightgray;
+    padding: 1em;
+    border-radius: 8px;
+}
+
+
+.collapsible {
+  background-color: lightgrey;
+  color: black;
+  cursor: pointer;
+  padding: 18px;
+  width: 100%;
+  border: none;
+  text-align: left;
+  outline: none;
+  font-size: 15px;
+}
+
+.collapsed, .collapsible:hover {
+  background-color: grey;
+}
+
+.content {
+  padding: 0 18px;
+  display: none;
+  overflow: hidden;
+  background-color: #f1f1f1;
+}
+
+.collapsible:after {
+  content: '\02795'; /* Unicode character for "plus" sign (+) */
+  font-size: 13px;
+  color: #777;
+  float: right;
+  margin-left: 5px;
+}
+
+.collapsed:after {
+  content: "\2796"; /* Unicode character for "minus" sign (-) */
+}
+
+.tooltip {
+  position: relative;
+  display: inline-block;
+}
+
+.tooltip .tooltiptext {
+  visibility: hidden;
+  width: 140px;
+  background-color: #555;
+  color: #fff;
+  text-align: center;
+  border-radius: 6px;
+  padding: 5px;
+  position: absolute;
+  z-index: 1;
+  bottom: 150%;
+  left: 50%;
+  margin-left: -75px;
+  opacity: 0;
+  transition: opacity 0.3s;
+}
+
+.tooltip .tooltiptext::after {
+  content: "";
+  position: absolute;
+  top: 100%;
+  left: 50%;
+  margin-left: -5px;
+  border-width: 5px;
+  border-style: solid;
+  border-color: #555 transparent transparent transparent;
+}
+
+.tooltip:hover .tooltiptext {
+  visibility: visible;
+  opacity: 1;
 }

public/test/file.php

@@ -1,13 +0,0 @@
-
-<!DOCTYPE html>
-<html>
-<body>
-
-<form action="upload.php" method="post" enctype="multipart/form-data">
-  Select image to upload:
-  <input type="file" name="fileToUpload" id="fileToUpload">
-  <input type="submit" value="Upload Image" name="submit">
-</form>
-
-</body>
-</html>

public/test/upload.php

@@ -1,33 +0,0 @@
-<?php
-$root = realpath($_SERVER["DOCUMENT_ROOT"]);
-$target_dir = $root."/storage/records";
-echo $target_dir;
-$target_file = $target_dir . basename($_FILES["fileToUpload"]["name"]);
-$uploadOk = 1;
-$imageFileType = strtolower(pathinfo($target_file,PATHINFO_EXTENSION));
-$MAXIMUM_FILESIZE = 10000  * 1024 * 1024; 
-// Check if image file is a actual image or fake image
-if(isset($_POST["submit"])) {
-    if (is_uploaded_file($_FILES['fileToUpload']['tmp_name'])) {
-        $safe_filename = preg_replace( 
-            array("/\s+/", "/[^-\.\w]+/"), 
-            array("_", ""), 
-            trim($_FILES['fileToUpload']['name'])); 
-        if ($_FILES['fileToUpload']['size'] <= $MAXIMUM_FILESIZE)       
-         {
-            $isMove = move_uploaded_file ( 
-                _FILES['fileToUpload']['tmp_name'], 
-                $dir_base.$safe_filename);
-
-            if ($isMove) {
-                echo "File moved";
-            } else {
-                echo "File not moved";
-            }
-        } else {
-            echo "Maximum file size exceeded";
-        }
-    } 
-}
-
-?>

public/upload/metadata.php

@@ -10,6 +10,7 @@
     <input type="file" name="file" value="file" required><br>
     <label for="spchoice">Species*</label><br>
     <input type="radio" name="spchoice" value="species" id="spchoice" checked>
+    <label for="spchoice">Species identified</label>
     <input type="text" name="species" value="<?=isset($_COOKIE['species']) ? $_COOKIE['species'] : "" ?>" id="species" placeholder="Enter a species..">
     <br>
     <span id="hint"></span>
@@ -52,6 +53,21 @@
    
     <label for="remarks">Remarks</label>
     <textarea id="remarks" name="remarks"></textarea><br>
+    <button type="button" class="collapsible">Optional Entries</button>
+    <div class="content">
+        <label for="make">Recorder manufacturer</label>
+        <input type="text" name="make" id="make">
+        <label for="model">Recorder model</label>
+        <input type="text" name="model" id="model">
+        <label for="serial">Recorder Serial Number</label>
+        <input type="text" name="serial" id="serial">
+        <label for="sample_rate">Samplerate (kHz)</label>
+        <input type="number" name="sample_rate" id="sample_rate" value="384">
+        <label for="time_expansion">Time Expansion Factor</label>
+        <input type="number" name="time_expansion" id="time_expansion" value="10">
+    </div>
     <input type="submit" name="submit" value="submit">
+    
+
 </form>
 <script src="scripts/ajax_species_suggestion.js"></script>

public/upload/submitmetadata.php

@@ -73,7 +73,7 @@ if (isset($_POST['submit']))
     if (isset($_POST['name'])) 
     {
         $_SESSION['observation']['recordist-name'] = $_POST['name'];
-        setcookie('name', $_SESSION['observation']['name'], time() + 86400 * 365.2, "/");
+        setcookie('name', $_SESSION['observation']['recordist-name'], time() + 86400 * 365.2, "/");
     } else {
         $_SESSION['error_msg'] .= "Incorrect Recordist Name.\n";
     }
@@ -116,6 +116,27 @@ if (isset($_POST['submit']))
     {
         $_SESSION['observation']['remarks'] = $_POST['remarks'];
     }
+    /* Optional entries */
+    if (isset($_POST['make']))
+    {
+        $_SESSION['observation']['make'] = $_POST['make'];
+    }
+    if (isset($_POST['model']))
+    {
+        $_SESSION['observation']['model'] = $_POST['model'];
+    }
+    if (isset($_POST['serial']))
+    {
+        $_SESSION['observation']['serial'] = $_POST['serial'];
+    }
+    if (isset($_POST['sample_rate']))
+    {
+        $_SESSION['observation']['sample_rate'] = $_POST['sample_rate'];
+    }
+    if (isset($_POST['time_expansion']))
+    {
+        $_SESSION['observation']['time_expansion'] = $_POST['time_expansion'];
+    }
 }
 
 

public/upload/submitobservation.php

@@ -30,8 +30,34 @@ if ($data = $req->fetch())
 {
 	$id = $data['id'];
 }
+
+/** Retrieve .wav duration*/
+$filepath = "$root/storage/records/".$_SESSION['observation']['file'];
+
+function wavDur($file) {
+	$fp = fopen($file, 'r');
+	if (fread($fp,4) == "RIFF") {
+		fseek($fp, 20);
+		$rawheader = fread($fp, 16);
+		$header = unpack('vtype/vchannels/Vsamplerate/Vbytespersec/valignment/vbits',$rawheader);
+		$pos = ftell($fp);
+		while (fread($fp,4) != "data" && !feof($fp)) {
+			$pos++;
+			fseek($fp,$pos);
+		}
+		$rawheader = fread($fp, 4);
+		$data = unpack('Vdatasize',$rawheader);
+		$sec = $data['datasize']/$header['bytespersec'];
+		$minutes = intval(($sec / 60) % 60);
+		$seconds = intval($sec % 60);
+		return str_pad($minutes,2,"0", STR_PAD_LEFT).":".str_pad($seconds,2,"0", STR_PAD_LEFT);
+	}
+}
+
+$t = wavDur($filepath);
+print_r($t);
 try {
-	$req = $db->prepare('INSERT INTO `records` (author_id, recordist_name, file_name, license, species, subspecies, sound_type, country, lat, lng, date, time, remarks) VALUES ( :id, :recordist_name, :file_name, :license, :species, :subspecies, :sound_type, :country, :lat, :lng, :date, :time, :remarks)');
+	$req = $db->prepare('INSERT INTO `records` (author_id, recordist_name, file_name, license, species, subspecies, sound_type, duration, make, model, serial, sample_rate, time_expansion, country, lat, lng, date, time, remarks) VALUES ( :id, :recordist_name, :file_name, :license, :species, :subspecies, :sound_type, :duration, :make, :model, :serial, :sample_rate, :time_expansion, :country, :lat, :lng, :date, :time, :remarks)');
 	$req->execute(array(
 		"id"=>$id,
 		"recordist_name"=>$_SESSION['observation']['recordist-name'],
@@ -40,12 +66,18 @@ try {
 		"species" => $_SESSION['observation']['species'],
 		"subspecies"=>$_SESSION['observation']['subspecies'],
 		"sound_type"=>implode(',', $_SESSION['observation']['type']),
+		"duration"=>$t,
+		"make"=>isset($_SESSION['observation']['make']) ? $_SESSION['observation']['make'] : "",
+		"model"=>isset($_SESSION['osbservation']['model']) ? $_SESSION['osbservation']['model'] : "",
+		"serial"=>isset($_SESSION['observation']['serial']) ? $_SESSION['observation']['serial'] : "", 
+		"sample_rate"=>isset($_SESSION['observation']['sample_rate']) ? $_SESSION['observation']['sample_rate'] : 384, 
+		"time_expansion"=>isset($_SESSION['observation']['time_expansion']) ? $_SESSION['observation']['time_expansion'] : 10,
 		"country"=>$_SESSION['observation']['country'],
 		"lat"=>$_SESSION['observation']['lat'],
 		"lng"=>$_SESSION['observation']['lng'],
 		"date"=>$_SESSION['observation']['date'],
 		"time"=>$_SESSION['observation']['time'],
-		"remarks"=>$_SESSION['observation']['remarks'],
+		"remarks"=>$_SESSION['observation']['remarks']
 	));
 } catch (Exception $e) {
 	die("Error : ".$e->getMessage());

public/upload/verify.php

@@ -66,7 +66,7 @@
 </script>
 
 <form action="submitobservation.php" method="post">
-    <input type="checkbox" id="allok" name="allok">
+    <input type="checkbox" id="allok" name="allok" required>
     <label for="allok">All informations are ok.</label><br>
     <input type="submit" name="submit" value="submit">
 </form>