48 lines
1.5 KiB
PHP
48 lines
1.5 KiB
PHP
<?php
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ini_set('display_errors', 1);
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ini_set('display_startup_errors', 1);
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error_reporting(E_ALL);
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// $root = realpath($_SERVER['DOCUMENT_ROOT']);
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require("/var/www/chiro-canto/public/database/credentials.php");
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// Connect the database
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try{
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$db = new PDO("mysql:host=$host;dbname=$database;charset=utf8",
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$user,
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$password,
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array(PDO::ATTR_ERRMODE => PDO::ERRMODE_EXCEPTION
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));
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}catch (Exception $e){
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die("Error : ".$e->getMessage());
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}
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if ($file = fopen("/var/www/chiro-canto/public/database/TAXREF14.0_CHIRO.csv", 'r')) {
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while($row = fgetcsv($file, 0, ','))
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{
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// print_r($row);
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$kingdom = $row[0];
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$phylum = $row[1];
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$class = $row[2];
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$order = $row[3];
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$family = $row[4];
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$subfamily = $row[5];
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$tribu = $row[6];
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$genus = explode(' ', $row[12])[0];
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$species = utf8_decode($row[12]);
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$req = $db->prepare('INSERT INTO `taxa` (taxon_kingdom, taxon_phylum, taxon_class, taxon_order, taxon_family, taxon_subfamily, taxon_tribu, taxon_genus, taxon_species) VALUES (:kingdom, :phylum, :class, :order, :family, :subfamily, :tribu, :genus, :species)');
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$req->execute(array(
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"kingdom"=>$kingdom,
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"phylum"=>$phylum,
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"class"=>$class,
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"order"=>$order,
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"family"=>$family,
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"subfamily"=>$subfamily,
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"tribu"=>$subfamily,
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"genus"=>$genus,
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"species"=>$species
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));
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}
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} else {
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echo "Cannot open file";
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}
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