GuilloteauQ/study-docker-repro-longevity
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study-docker-repro-longevity/config/default_config.yaml

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The updating of the blacklist has been reworked to be functional: it is not relying on a symlink anymore (this symlink has been removed). Instead, the last blacklist is fetched by the get_artifacts_to_build function. Modified Snakefile according to the change in the name of a build status. Created a default config file for Snakemake, allowing custom configurations to be written to "config.yaml".
2024-08-20 18:55:12 +02:00
folder_artifacts_nickel: "artifacts/nickel"
folder_artifacts_json: "artifacts/json"
folder_blacklists: "blacklists"
Comments on Snakemake config files.
2024-08-20 18:59:31 +02:00
system: "g5k" # can be "g5k" to run on the Grid'5000 testbed, or "local" for local execution
The updating of the blacklist has been reworked to be functional: it is not relying on a symlink anymore (this symlink has been removed). Instead, the last blacklist is fetched by the get_artifacts_to_build function. Modified Snakefile according to the change in the name of a build status. Created a default config file for Snakemake, allowing custom configurations to be written to "config.yaml".
2024-08-20 18:55:12 +02:00
prefix: "outputs"
analysis_dir: "outputs/analysis"
site: "grenoble"
cluster: "dahu"
max_duration: 60 # 1 hour
checkpoint: 1 # 1 minute
besteffort: True
#sleep_time: 300 # 5 minutes
sleep_time: 30 # 0.5 minutes
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