study-docker-repro-longevity/config/config.yaml

folder_artifacts_nickel: "artifacts/nickel"
folder_artifacts_json: "artifacts/json"
folder_blacklists: "blacklists"
system: "local"
prefix: "outputs"
analysis_dir: "outputs/analysis"
plot_dir: "outputs/analysis/plot"

site: "grenoble"
cluster: "dahu"
max_duration: 60
checkpoint: 1
besteffort: True
sleep_time: 30
move artifacts_nickel and artifacts_json to artifacts/nickel and artifacts/json 2024-07-19 16:38:18 +02:00			`folder_artifacts_nickel: "artifacts/nickel"`
			`folder_artifacts_json: "artifacts/json"`
Add config for snakemake 2024-07-19 16:33:27 +02:00			`folder_blacklists: "blacklists"`
Comments on Snakemake config files. 2024-08-20 18:59:31 +02:00			`system: "local"`
add prefix to config 2024-07-21 16:14:58 +02:00			`prefix: "outputs"`
Fixed analysis part in Snakemake again, needs testing. Moved test and template artifacts back to parent folder. Changes analysis output dir. 2024-08-19 19:02:23 +02:00			`analysis_dir: "outputs/analysis"`
Fixed aggregation by separating it into multiple rules. Fixed calls to get_analysis_dates. Fixed plot headers and plot script in plotting rules, which are now working (close #44). Rule all has been modified according to these changes. Removed global analysis rule. List of artifacts to build now generated using all available blacklists, not just the last one (ensures that we don't miss some blacklisted artifacts). Fixed update blacklist rule, because of grep's output. Removed default blacklist. 2024-08-22 17:55:05 +02:00			`plot_dir: "outputs/analysis/plot"`
first try for g5k execution 2024-07-20 15:41:56 +02:00
			`site: "grenoble"`
			`cluster: "dahu"`
Comments on Snakemake config files. 2024-08-20 18:59:31 +02:00			`max_duration: 60`
			`checkpoint: 1`
add prefix to config 2024-07-21 16:14:58 +02:00			`besteffort: True`
Comments on Snakemake config files. 2024-08-20 18:59:31 +02:00			`sleep_time: 30`