study-docker-repro-longevity/test_scripts/run.sh

#!/bin/bash

cd ..

OUTPUT_PATH=output
CACHE_DIR=cache
TESTFILE=$1

if [ ! -d $OUTPUT_PATH ]
then
    mkdir $OUTPUT_PATH
fi
if [ ! -d $CACHE_DIR ]
then
    mkdir $CACHE_DIR
fi

./ecg.py $TESTFILE -p $OUTPUT_PATH/pkglist.csv -b $OUTPUT_PATH/build_status.csv -a $OUTPUT_PATH/artifact_hash.csv -c $CACHE_DIR --docker-cache
Added support for cache. Added run and clean scripts. 2024-07-12 12:10:03 +02:00			`#!/bin/bash`

Updated doc with details on analysis outputs. Moved test scripts to a dedicated directory. 2024-08-22 19:19:40 +02:00			`cd ..`

Added support for cache. Added run and clean scripts. 2024-07-12 12:10:03 +02:00			`OUTPUT_PATH=output`
			`CACHE_DIR=cache`
Initial support for Docker errors parsing. 2024-07-12 17:50:19 +02:00			`TESTFILE=$1`
Added support for cache. Added run and clean scripts. 2024-07-12 12:10:03 +02:00
			`if [ ! -d $OUTPUT_PATH ]`
			`then`
			`mkdir $OUTPUT_PATH`
			`fi`
			`if [ ! -d $CACHE_DIR ]`
			`then`
			`mkdir $CACHE_DIR`
			`fi`

Fixed analysis part in Snakemake again, needs testing. Moved test and template artifacts back to parent folder. Changes analysis output dir. 2024-08-19 19:02:23 +02:00			`./ecg.py $TESTFILE -p $OUTPUT_PATH/pkglist.csv -b $OUTPUT_PATH/build_status.csv -a $OUTPUT_PATH/artifact_hash.csv -c $CACHE_DIR --docker-cache`