GuilloteauQ/study-docker-repro-longevity
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minor improvement to protocol

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Quentin Guilloteau 2024-08-02 17:49:55 +02:00
parent 43ceead6b0
commit 199d1dc282
1 changed files with 26 additions and 10 deletions
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protocol/protocol.tex
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@ -15,11 +15,10 @@ frame = single,
breaklines=true breaklines=true
} }
\newcommand{\noteqg}{\todo[backgroundcolor=blue!10,bordercolor=blue,inline,caption={}]} \newcommand{\noteqg}{\todo[backgroundcolor=blue!10,bordercolor=blue,inline,caption={}]}
%\usepackage{amssymb} %\usepackage{amssymb}
%\usepackage{booktabs} \usepackage{booktabs}
%\usepackage{adjustbox} %\usepackage{adjustbox}
\newcommand{\dfile}{\texttt{Dockerfile}} \newcommand{\dfile}{\texttt{Dockerfile}}
@ -88,8 +87,6 @@ The definition of the schema is archived on Software Heritage \cite{nickel_schem
git_packages = [ git_packages = [
{ name = "bar", location = "~/bar" } { name = "bar", location = "~/bar" }
], ],
misc_packages = [
],
} }
\end{lstlisting} \end{lstlisting}
\end{minipage} \end{minipage}
@ -106,7 +103,7 @@ This Python script\ \cite{ecg_code} takes as input a (verified) JSON representat
\item Log the cryptographic hash of the downloaded artifact (Section \ref{sec:download}) \item Log the cryptographic hash of the downloaded artifact (Section \ref{sec:download})
\item Extract the artifact \item Extract the artifact
\item Build the docker image (Section \ref{sec:docker_build}) \item Build the docker image (Section \ref{sec:docker_build})
\item If the build is successful, gather information about the produced software environment (Sections \ref{sec:package_managers}, \ref{sec:git}, and \ref{sec:misc}) \item If the build is successful, gather information about the produced software environment (Sections \ref{sec:package_managers}, \ref{sec:git}, \ref{sec:misc}, and \ref{sec:pyenv})
\item If the build failed, gather information about the reason of the failure \item If the build failed, gather information about the reason of the failure
\end{enumerate} \end{enumerate}
@ -169,17 +166,37 @@ Below is an example of data collected for the downloading of the \texttt{Minicon
Miniconda3-py37_4.12.0-Linux-x86_64,4dc4214839c60b2f5eb3efbdee1ef5d9b45e74f2c09fcae6c8934a13f36ffc3e,misc Miniconda3-py37_4.12.0-Linux-x86_64,4dc4214839c60b2f5eb3efbdee1ef5d9b45e74f2c09fcae6c8934a13f36ffc3e,misc
\end{lstlisting} \end{lstlisting}
\subsubsection{Python Virtual Environment (\texttt{pyenv})}\label{sec:pyenv}
Even if \texttt{pip} is managed in the ``Package Managers'' section (Section \ref{sec:package_managers}), when authors use a virtual environment, \ecg\ needs to query this exact Python environment, and not the global one.
\subsection{Snakemake} \subsection{Snakemake}
\subsection{R} \subsection{R}
\section{Data collection} \section{Data collection}
\subsection{Has the data collection started?}
No.
\subsection{Considered Conferences} \subsection{Considered Conferences}
\begin{itemize} \begin{table}
\item Conference Name, Submission Date, Proceeding Publication Date \centering
\end{itemize} \begin{tabular}{lrr}
\toprule
Conference Name & Submission Date & Proceedings Publication Date\\
\midrule
EuroPar 2024 & March 2024 & September 2024\\
SuperComputing 2024 & April 2024 & November 2024 \\
\bottomrule
\end{tabular}
\caption{Considered Conferences and associated important dates}
\label{tab:conferences}
\end{table}
Table \ref{tab:conferences} summarizes the considered conferences and their important dates.
\noteqg{todo} \noteqg{todo}
@ -258,10 +275,9 @@ The software environment will be managed by Nix \cite{dolstra2004nix}.
\noteqg{TODO: do an estimation} \noteqg{TODO: do an estimation}
\subsection{Data and Source Code Availability} \subsection{Data and Source Code Long-term Availability}
The collected data will be stored on Zenodo. The collected data will be stored on Zenodo.
The Source code will be archived on Software-Heritage. The Source code will be archived on Software-Heritage.
\printbibliography \printbibliography