From 52c629b9b83e99fdecabe6282aad00c8f72df9e9 Mon Sep 17 00:00:00 2001 From: antux18 Date: Tue, 20 Aug 2024 18:59:31 +0200 Subject: [PATCH] Comments on Snakemake config files. --- config/config.yaml | 9 ++++----- config/default_config.yaml | 2 +- 2 files changed, 5 insertions(+), 6 deletions(-) diff --git a/config/config.yaml b/config/config.yaml index 0acad79..371d426 100644 --- a/config/config.yaml +++ b/config/config.yaml @@ -1,14 +1,13 @@ folder_artifacts_nickel: "artifacts/nickel" folder_artifacts_json: "artifacts/json" folder_blacklists: "blacklists" -system: "local" # can be "local" for local execution +system: "local" prefix: "outputs" analysis_dir: "outputs/analysis" site: "grenoble" cluster: "dahu" -max_duration: 60 # 1 hour -checkpoint: 1 # 1 minute +max_duration: 60 +checkpoint: 1 besteffort: True - #sleep_time: 300 # 5 minutes -sleep_time: 30 # 0.5 minutes +sleep_time: 30 diff --git a/config/default_config.yaml b/config/default_config.yaml index 2a8472e..d2b7341 100644 --- a/config/default_config.yaml +++ b/config/default_config.yaml @@ -1,7 +1,7 @@ folder_artifacts_nickel: "artifacts/nickel" folder_artifacts_json: "artifacts/json" folder_blacklists: "blacklists" -system: "g5k" # can be "local" for local execution +system: "g5k" # can be "g5k" to run on the Grid'5000 testbed, or "local" for local execution prefix: "outputs" analysis_dir: "outputs/analysis"