GuilloteauQ/study-docker-repro-longevity
1
0
Fork 0
Code Issues 6 Pull Requests Actions Projects Releases Wiki Activity

Added artifacts_json to git ignore and deleting, closing #15. Deleted old YAML files. Added hints on the config template.

Browse Source
This commit is contained in:
antux18 2024-07-19 15:23:00 +02:00
parent 57ff34e8b9
commit cb98727554
20 changed files with 4 additions and 314 deletions
Show Stats Download Patch File Download Diff File Expand all files Collapse all files

1
.gitignore vendored
View File

@ -3,6 +3,7 @@ output/*
cache/*
examples/*
.snakemake/*
artifacts_json/*
pkglist.csv
log.txt
build_status.csv

38
artifacts_json/breitweiser_high.json
View File

@ -1,38 +0,0 @@
{
"artifact_url": "https://zenodo.org/record/7544675/files/SF2-code.tar.gz",
"dockerfile_location": "bdm-paper-examples/docker",
"doi": "10.1145/3572848.3577480",
"git_packages": [
{
"location": "~/.pyenv",
"name": "pyenv"
}
],
"image_name": "bdm-publication-image-v7",
"misc_packages": [
{
"name": "NetLogo-6.2.0-64",
"type": "tar",
"url": "http://ccl.northwestern.edu/netlogo/6.2.0/NetLogo-6.2.0-64.tgz"
},
{
"name": "root_v6.22.06_python3.9_ubuntu-20.04",
"type": "tar",
"url": "http://biodynamo-lfs.web.cern.ch/biodynamo-lfs/third-party/root_v6.22.06_python3.9_ubuntu-20.04.tar.gz"
},
{
"name": "qt_v5.12.10_ubuntu-20.04",
"type": "tar",
"url": "http://biodynamo-lfs.web.cern.ch/biodynamo-lfs/third-party/qt_v5.12.10_ubuntu-20.04.tar.gz"
},
{
"name": "paraview_v5.9.0_ubuntu-20.04_default",
"type": "tar",
"url": "http://biodynamo-lfs.web.cern.ch/biodynamo-lfs/third-party/paraview_v5.9.0_ubuntu-20.04_default.tar.gz"
}
],
"package_managers": [
"dpkg"
],
"type": "tar"
}

13
artifacts_json/isakov_taxonomy.json
View File

@ -1,13 +0,0 @@
{
"artifact_url": "https://zenodo.org/record/6632461/files/SC22_artifacts_submission.zip",
"dockerfile_location": "SC22_artifacts_submission",
"doi": "10.5555/3571885.3571906",
"git_packages": [],
"image_name": "taxo:artefact",
"misc_packages": [],
"package_managers": [
"dpkg",
"pip"
],
"type": "zip"
}

24
artifacts_json/moses_high.json
View File

@ -1,24 +0,0 @@
{
"artifact_url": "https://zenodo.org/record/7508499/files/wsmoses/PolygeistGPU-Docker-v0.2.1.zip",
"dockerfile_location": "wsmoses-PolygeistGPU-Docker-ba18197/MocCUDA",
"doi": "10.1145/3572848.3577475",
"git_packages": [
{
"location": "/root/MocCUDA",
"name": "MocCUDA"
}
],
"image_name": "polygeist:artefact",
"misc_packages": [
{
"name": "cmake-3.23.1",
"type": "tar",
"url": "https://github.com/Kitware/CMake/releases/download/v3.23.1/cmake-3.23.1.tar.gz"
}
],
"package_managers": [
"dpkg",
"pip"
],
"type": "zip"
}

19
artifacts_json/parasyris_approximate.json
View File

@ -1,19 +0,0 @@
{
"artifact_url": "https://zenodo.org/record/6926481/files/koparasy/HPAC-v0.0.0-Puppeteer.zip",
"dockerfile_location": "koparasy-HPAC-2723bb8/approx/puppeteer/container",
"doi": "10.5555/3571885.3571974",
"git_packages": [],
"image_name": "puppeteer:artefact",
"misc_packages": [
{
"name": "HPAC",
"type": "zip",
"url": "https://github.com/koparasy/HPAC/archive/refs/heads/develop.zip"
}
],
"package_managers": [
"dpkg",
"pip"
],
"type": "zip"
}

23
artifacts_json/template.json
View File

@ -1,23 +0,0 @@
{
"artifact_url": "https://example.com/artifact.zip",
"dockerfile_location": "path/to/docker/folder",
"doi": "...",
"git_packages": [
{
"location": "path/to/git/repo",
"name": "pkg1"
}
],
"image_name": "image:version",
"misc_packages": [
{
"name": "mpkg1",
"type": "zip",
"url": "https://"
}
],
"package_managers": [
"dpkg"
],
"type": "zip"
}

24
artifacts_json/test.json
View File

@ -1,24 +0,0 @@
{
"artifact_url": "http://localhost/artifact.zip",
"dockerfile_location": "./",
"doi": "...",
"git_packages": [
{
"location": "/pkg1",
"name": "pkg1"
}
],
"image_name": "prog:latest",
"misc_packages": [
{
"name": "mpkg1",
"type": "zip",
"url": "http://localhost/package1.zip"
}
],
"package_managers": [
"dpkg",
"pip"
],
"type": "zip"
}

19
artifacts_json/wang_tgopt.json
View File

@ -1,19 +0,0 @@
{
"artifact_url": "https://zenodo.org/record/7328505/files/tgopt-artifact.tgz",
"dockerfile_location": "tgopt-artifact",
"doi": "10.1145/3572848.3577490",
"git_packages": [],
"image_name": "tgopt:artefact",
"misc_packages": [
{
"name": "Miniconda3-py37_4.12.0-Linux-x86_64",
"type": "zip",
"url": "https://repo.anaconda.com/miniconda/Miniconda3-py37_4.12.0-Linux-x86_64.sh"
}
],
"package_managers": [
"dpkg",
"conda"
],
"type": "tar"
}

37
artifacts_json/ziogas_deinsum-cpu.json
View File

@ -1,37 +0,0 @@
{
"artifact_url": "https://zenodo.org/record/7004393/files/deinsum/sc22-artifact-0.4.zip",
"dockerfile_location": "deinsum-sc22-artifact-7559901/docker_cpu",
"doi": "10.5555/3571885.3571918",
"git_packages": [
{
"location": "/dace",
"name": "dace"
},
{
"location": "/multilinear-algebra-sc22-artifact",
"name": "multilinear-algebra-sc22-artifact"
},
{
"location": "/ctf",
"name": "ctf"
}
],
"image_name": "deinsum:artefact-cpu",
"misc_packages": [
{
"name": "mpich-3.1.4",
"type": "tar",
"url": "http://www.mpich.org/static/downloads/3.1.4/mpich-3.1.4.tar.gz"
},
{
"name": "Python-3.10.2",
"type": "tar",
"url": "https://www.python.org/ftp/python/3.10.2/Python-3.10.2.tgz"
}
],
"package_managers": [
"dpkg",
"pip"
],
"type": "zip"
}

32
artifacts_json/ziogas_deinsum-gpu.json
View File

@ -1,32 +0,0 @@
{
"artifact_url": "https://zenodo.org/record/7004393/files/deinsum/sc22-artifact-0.4.zip",
"dockerfile_location": "deinsum-sc22-artifact-7559901/docker_gpu",
"doi": "10.5555/3571885.3571918",
"git_packages": [
{
"location": "/dace",
"name": "dace"
},
{
"location": "/multilinear-algebra-sc22-artifact",
"name": "multilinear-algebra-sc22-artifact"
},
{
"location": "/ctf",
"name": "ctf"
}
],
"image_name": "deinsum:artefact_gpu",
"misc_packages": [
{
"name": "pip",
"type": "zip",
"url": "https://bootstrap.pypa.io/get-pip.py"
}
],
"package_managers": [
"dpkg",
"pip"
],
"type": "zip"
}

6
artifacts_nickel/template.ncl
View File

@ -1,15 +1,15 @@
let { Artifact, .. } = import "../workflow/nickel/artifact_contract.ncl" in
{
artifact_url = "https://example.com/artifact.zip",
type = "zip",
type = "zip", # Possible values: zip, tar
doi = "...",
image_name = "image:version",
dockerfile_location = "path/to/docker/folder",
package_managers = [ "dpkg" ],
package_managers = [ "dpkg" ], # Possible values: dpkg, rpm, pacman, pip, conda
git_packages = [
{ name = "pkg1", location = "path/to/git/repo"}
],
misc_packages = [
{ name = "mpkg1", url = "http://example.com/package.zip", type = "zip" }
{ name = "mpkg1", url = "http://example.com/package.zip", type = "zip" # Possible values: zip, tar }
]
} | Artifact

7
artifacts_yaml/ppopp23/gpu_to_cpu_transpilation_and_optimization_via_high_level_parallel_constructs.yaml
View File

@ -1,7 +0,0 @@
artifact_url: "https://zenodo.org/record/7508499/files/wsmoses/PolygeistGPU-Docker-v0.2.1.zip"
type: "zip"
doi: "10.1145/3572848.3577475"
image_name: "polygeist:artefact"
dockerfile_location: "wsmoses-PolygeistGPU-Docker-ba18197/MocCUDA"
package_managers:
- "dpkg"

8
artifacts_yaml/ppopp23/high_performance_and_scalable_agent_based_simulation_with_BioDynaMo.yaml
View File

@ -1,8 +0,0 @@
artifact_url: "https://zenodo.org/record/7544675/files/SF2-code.tar.gz"
type: "tar"
doi: "10.1145/3572848.3577480"
image_name: "bdm-publication-image-v7"
dockerfile_location: "bdm-paper-examples/docker"
package_managers:
- "dpkg"
# Build done by running build.sh and not just docker build, but this is not implemented yet

8
artifacts_yaml/ppopp23/tgopt_redundancy_aware-optimizations_for_temporal_graph_attention_network.yaml
View File

@ -1,8 +0,0 @@
artifact_url: "https://zenodo.org/record/7328505/files/tgopt-artifact.tgz"
type: "tar"
doi: "10.1145/3572848.3577490"
image_name: "tgopt:artefact"
dockerfile_location: "tgopt-artifact"
package_managers:
- "dpkg"
- "conda"

8
artifacts_yaml/sc22/a_taxonomy_of_error_sources_in_hpc_io_machine_learning_models.yaml
View File

@ -1,8 +0,0 @@
artifact_url: "https://zenodo.org/record/6632461/files/SC22_artifacts_submission.zip"
type: "zip"
doi: "10.5555/3571885.3571906"
image_name: "taxo:artefact"
dockerfile_location: "SC22_artifacts_submission"
package_managers:
- "dpkg"
- "pip"

8
artifacts_yaml/sc22/approximate_copmuting_through_the_lens_of_uncertainty_quantification.yaml
View File

@ -1,8 +0,0 @@
artifact_url: "https://zenodo.org/record/6926481/files/koparasy/HPAC-v0.0.0-Puppeteer.zip"
type: "zip"
doi: "10.5555/3571885.3571974"
image_name: "puppeteer:artefact"
dockerfile_location: "koparasy-HPAC-2723bb8/approx/puppeteer/container"
package_managers:
- "dpkg"
- "pip"

7
artifacts_yaml/sc22/deinsum_practially_io_optimal_multi_linear_algebra-cpu.yaml
View File

@ -1,7 +0,0 @@
artifact_url: "https://zenodo.org/record/7004393/files/deinsum/sc22-artifact-0.4.zip"
type: "zip"
doi: "10.5555/3571885.3571918"
image_name: "deinsum:artefact-cpu"
dockerfile_location: "deinsum-sc22-artifact-7559901/docker_cpu"
package_managers:
- "dpkg"

7
artifacts_yaml/sc22/deinsum_practially_io_optimal_multi_linear_algebra-gpu.yaml
View File

@ -1,7 +0,0 @@
artifact_url: "https://zenodo.org/record/7004393/files/deinsum/sc22-artifact-0.4.zip"
type: "zip"
doi: "10.5555/3571885.3571918"
image_name: "deinsum:artefact_gpu"
dockerfile_location: "deinsum-sc22-artifact-7559901/docker_gpu"
package_managers:
- "dpkg"

14
artifacts_yaml/template.yaml
View File

@ -1,14 +0,0 @@
artifact_url: "https://example.com/artifact.zip"
type: "zip" # Possible values: zip, tar
doi: "XX.XXXX/XXXXXXX.XXXXXXX"
image_name: "image1:version"
dockerfile_location: "path/to/docker/folder"
package_managers:
- "dpkg" # Possible values: dpkg, rpm, pacman, pip, conda
git_packages:
- name: "pkg1"
location: "path/to/git/repo"
misc_packages:
- name: "mpkg1"
url: "https://example.com/package1.zip"
type: "zip" # Possible values: zip, tar

15
artifacts_yaml/test.yaml
View File

@ -1,15 +0,0 @@
artifact_url: "http://localhost/artifact.zip"
type: "zip"
doi: "XX.XXXX/XXXXXXX.XXXXXXX"
image_name: "prog:latest"
dockerfile_location: "./"
package_managers:
- "dpkg"
- "pip"
git_packages:
- name: "pkg1"
location: "/pkg1"
misc_packages:
- name: "mpkg1"
url: "http://localhost/package1.zip"
type: "zip"