GuilloteauQ/study-docker-repro-longevity
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Fixed analysis in Snakefile. Started working on plotting part.

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antux18 2024-08-19 16:37:51 +02:00
parent f6f20cb0d6
commit ece5749b7a
1 changed files with 60 additions and 10 deletions
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70
workflow/Snakefile
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@ -89,18 +89,68 @@ ANALYSIS_SCRIPTS = {
"artifact": f"python3 {ANALYSIS_DIR}/artifact_analysis.py"
}
rule all_analysis:
rule analysis:
input:
expand(f"{PREFIX}/{{folder}}/{{artifact}}/{{date}}.csv",\
folder=["pkgs", "build_status", "artifact_hash"],\
artifact=ARTIFACTS,\
date=DATE
{
"sources_stats": expand(f"{PREFIX}/pkgs/{{artifact}}/{{date}}.csv",\
artifact = ARTIFACTS,\
date = DATE
),
"pkgs_changes": expand(f"{PREFIX}/pkgs/{{artifact}}/{{date}}.csv",\
artifact = ARTIFACTS,\
date = DATE
),
"build_status": expand(f"{PREFIX}/build_status/{{artifact}}/{{date}}.csv",\
artifact = ARTIFACTS,\
date = DATE
),
"artifact_hash": expand(f"{PREFIX}/artifact_hash/{{artifact}}/{{date}}.csv",\
artifact = ARTIFACTS,\
date = DATE
),
}
output:
{
"sources_stats": expand(f"{ANALYSIS_DIR}/sources_stats/{{artifact}}/{{date}}.csv",\
artifact = ARTIFACTS,\
date = DATE
),
"pkgs_changes": expand(f"{ANALYSIS_DIR}/pkgs_changes/{{artifact}}/{{date}}.csv",\
artifact = ARTIFACTS,\
date = DATE
),
"build_status": expand(f"{ANALYSIS_DIR}/build_status/{{artifact}}/{{date}}.csv",\
artifact = ARTIFACTS,\
date = DATE
),
"artifact_hash": expand(f"{ANALYSIS_DIR}/artifact_hash/{{artifact}}/{{date}}.csv",\
artifact = ARTIFACTS,\
date = DATE
),
}
shell:
f"{{{{ANALYSIS_SCRIPTS[wildcards.folder]}}}} -i {{input[wildcards.folder]}} -o {{output[wildcards.folder]}}"
PLOT_HEADERS = {
"sources_stats": ["dpkg", "rpm", "pacman", "pip", "conda", "git", "misc"],
"pkgs_changes": ["dpkg", "rpm", "pacman", "pip", "conda", "git", "misc"],
"build_status": ["success", "package_unavailable", "baseimage_unavailable", "artifact_unavailable", "dockerfile_not_found", "script_crash", "job_time_exceeded", "unknown_error"],
"artifact": ["available", "unavailable", "changed"]
}
rule plot:
input:
expand(f"{ANALYSIS_DIR}/{{folder}}/{{artifact}}/{{date}}.csv",\
folder = ["sources_stats", "pkgs_changes", "build_status", "artifact"],\
artifact = ARTIFACTS,\
date = DATE
),
output:
expand(f"{ANALYSIS_DIR}/{{folder}}/{{artifact}}/{{date}}.csv",\
folder=["sources_stats", "pkgs_changes", "build_status", "artifact"],\
artifact=ARTIFACTS,\
date=DATE
expand(f"{ANALYSIS_DIR}/{{folder}}/{{plot_type}}.pdf",\
folder = ["sources_stats", "pkgs_changes", "build_status", "artifact"],\
plot_type = ["line", "bar"],\
artifact = ARTIFACTS,\
date = DATE
),
shell:
f"{{{{ANALYSIS_SCRIPTS[wildcards.folder]}}}} -i {{input}} -o {{output}}"
f"Rscript plot.r {{{{wildcards.plot_type}}}} {{{{PLOT_HEADERS[wildcards.folder]}}}}"