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48d3da9c7d
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Removed image name from the config file, now generated from the artifact URL (close #24). Fixed the "--no-cache" option when using Docker cache.
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2024-07-24 18:58:50 +02:00 |
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d2768d5373
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Added initial support for Python venvs, close #21. Disabled the Docker build cache by default, and added an option to reenable it, close #23. Removed conditions on the existance of git_packages and misc_packages, because the workflow enforces their existance with the Nickel artifact contract.
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2024-07-24 18:05:31 +02:00 |
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4329e333ea
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Added shi_welder, renamed OAR timeout error.
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2024-07-24 10:13:53 +02:00 |
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687b777912
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Merge remote-tracking branch 'origin/workflow_config'
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2024-07-23 17:26:03 +02:00 |
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Quentin Guilloteau
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944b1bf6f9
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checkpoint in case of reaching walltime
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2024-07-21 17:32:04 +02:00 |
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Quentin Guilloteau
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566eb778f2
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fix execution on grid5000 from namespace
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2024-07-21 16:13:52 +02:00 |
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Quentin Guilloteau
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318955865c
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typo
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2024-07-21 16:12:40 +02:00 |
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Quentin Guilloteau
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8ed548c435
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first try for g5k execution
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2024-07-20 15:41:56 +02:00 |
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cc605943a9
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Added a comment section for artifacts configuration. Moved hints to the Nickel contract.
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2024-07-19 17:05:46 +02:00 |
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Quentin Guilloteau
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9769f6b533
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Add config for snakemake
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2024-07-19 16:33:27 +02:00 |
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a7bf9cee94
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Written a doc for the output. Removed the "type" attribute from the Nickel contract, closing #17.
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2024-07-19 16:18:49 +02:00 |
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d791064183
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Added Nickel constraint on values.
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2024-07-17 14:56:38 +02:00 |
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1aaa77cba3
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Fixed Nickel contract and check files. Fixed input/output files in Snakefile.
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2024-07-16 17:35:09 +02:00 |
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69e447ab0a
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Fixed Nickel config files. Added artifact hash log on Snakefile + modified some variables names. Switched from 'tgz' to 'tar' for archive type.
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2024-07-16 16:47:17 +02:00 |
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Quentin Guilloteau
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4432a93123
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integrate nickel in workflow
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2024-07-16 13:59:44 +02:00 |
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Quentin Guilloteau
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28126f8b3e
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basic workflow for ecg
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2024-07-11 15:17:16 +02:00 |
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Quentin Guilloteau
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3737dd29e6
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add start of workflow to extract non blacklisted artifacts
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2024-07-11 13:37:07 +02:00 |
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