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be05d8d70a
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Deleted the Git package from the configuration file of the test artifact, because it is a Git repo that is generated when the container is being built, so version number will always change.
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2024-08-22 18:40:08 +02:00 |
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72a638cd17
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Added conference date to Nickel contract + artifacts (close #29). Changes localhost to 127.0.0.1 in test artifact, because localhost doesn't work in a Nix environment.
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2024-08-20 17:44:41 +02:00 |
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0a8b0c85c6
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Fixed analysis part in Snakemake again, needs testing. Moved test and template artifacts back to parent folder. Changes analysis output dir.
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2024-08-19 19:02:23 +02:00 |
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e943be4efe
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Integrated softenv analysis to workflow. Changed input and output cmd options in analysis scripts to take multiple files at once. Moved test and template artifacts in an excluded folder.
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2024-08-19 14:59:08 +02:00 |
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74228cd1c5
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Now optional with a default value in the Nickel contract: version, comment, git_packages, misc_packages, python_venvs (close #30).
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2024-08-06 11:44:38 +02:00 |
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114d0e5816
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Added support for other virtualization techs in the Nickel contract (close #28). Added Nix dependency for Snakemake diagram generation.
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2024-07-30 18:06:16 +02:00 |
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ff2fc2d365
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Added version number to the Nickel contracts and artifacts (close #27).
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2024-07-29 16:39:30 +02:00 |
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48d3da9c7d
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Removed image name from the config file, now generated from the artifact URL (close #24). Fixed the "--no-cache" option when using Docker cache.
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2024-07-24 18:58:50 +02:00 |
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d2768d5373
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Added initial support for Python venvs, close #21. Disabled the Docker build cache by default, and added an option to reenable it, close #23. Removed conditions on the existance of git_packages and misc_packages, because the workflow enforces their existance with the Nickel artifact contract.
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2024-07-24 18:05:31 +02:00 |
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aab563fbfe
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Fixed shi_welder (wrong path to Git repos).
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2024-07-24 16:17:11 +02:00 |
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8687bb03f4
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Switching from pip freeze to pip list because of inconsistent output mentionned in #18, close #22. Adding albab_k9db config.
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2024-07-24 11:34:05 +02:00 |
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cc50349cf5
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Almost solved the removing of bash login messages from outputs (#18) but still needs some work ("dace" pip package incorrectly displayed for deinsum).
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2024-07-23 21:04:34 +02:00 |
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687b777912
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Merge remote-tracking branch 'origin/workflow_config'
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2024-07-23 17:26:03 +02:00 |
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Quentin Guilloteau
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d7749369b4
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move artifacts_nickel and artifacts_json to artifacts/nickel and artifacts/json
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2024-07-19 16:38:18 +02:00 |
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