Commit Graph

11 Commits

Author SHA1 Message Date
e943be4efe Integrated softenv analysis to workflow. Changed input and output cmd options in analysis scripts to take multiple files at once. Moved test and template artifacts in an excluded folder. 2024-08-19 14:59:08 +02:00
74228cd1c5 Now optional with a default value in the Nickel contract: version, comment, git_packages, misc_packages, python_venvs (close #30). 2024-08-06 11:44:38 +02:00
114d0e5816 Added support for other virtualization techs in the Nickel contract (close #28). Added Nix dependency for Snakemake diagram generation. 2024-07-30 18:06:16 +02:00
ff2fc2d365 Added version number to the Nickel contracts and artifacts (close #27). 2024-07-29 16:39:30 +02:00
48d3da9c7d Removed image name from the config file, now generated from the artifact URL (close #24). Fixed the "--no-cache" option when using Docker cache. 2024-07-24 18:58:50 +02:00
d2768d5373 Added initial support for Python venvs, close #21. Disabled the Docker build cache by default, and added an option to reenable it, close #23. Removed conditions on the existance of git_packages and misc_packages, because the workflow enforces their existance with the Nickel artifact contract. 2024-07-24 18:05:31 +02:00
aab563fbfe Fixed shi_welder (wrong path to Git repos). 2024-07-24 16:17:11 +02:00
8687bb03f4 Switching from pip freeze to pip list because of inconsistent output mentionned in #18, close #22. Adding albab_k9db config. 2024-07-24 11:34:05 +02:00
cc50349cf5 Almost solved the removing of bash login messages from outputs (#18) but still needs some work ("dace" pip package incorrectly displayed for deinsum). 2024-07-23 21:04:34 +02:00
687b777912 Merge remote-tracking branch 'origin/workflow_config' 2024-07-23 17:26:03 +02:00
Quentin Guilloteau
d7749369b4 move artifacts_nickel and artifacts_json to artifacts/nickel and artifacts/json 2024-07-19 16:38:18 +02:00