Integrate analysis and plotting parts to the Snakemake workflow #44
antux18
commented 2024-08-15 11:34:35 +02:00
Collaborator
No description provided.
antux18
added the 2024-08-15 11:34:35 +02:00
Priority
Critical
Kind/Enhancement
labels
antux18
self-assigned this 2024-08-15 11:34:35 +02:00
antux18
referenced this issue from a commit 2024-08-15 12:24:22 +02:00
The handling of the output of ECG and of ECG's own errors has been transfered to a new wrapper script that calls ECG. Now, ECG doesn't take an output log file as parameter, rather just write everything to the terminal. It is then retrieved by the wrapper scripts that writes the ouput to the given output log file, and logs any script crash. README has been updated according to these changes, and the verbose and log path options of ECG have been removed. Close #25.
antux18
referenced this issue from a commit 2024-08-19 15:22:28 +02:00
Integrated the whole analysis part to the Snakefile, but needs testing (#44).
antux18
referenced this issue from a commit 2024-08-22 18:01:11 +02:00
Fixed aggregation by separating it into multiple rules. Fixed calls to get_analysis_dates. Fixed plot headers and plot script in plotting rules, which are now working (close #44). Rule all has been modified according to these changes. Removed global analysis rule.
antux18
closed this issue 2024-08-22 18:01:11 +02:00
Loading…
x
Reference in New Issue
Block a user
No description provided.
Delete Branch "%!s()"
Deleting a branch is permanent. Although the deleted branch may continue to exist for a short time before it actually gets removed, it CANNOT be undone in most cases. Continue?