study-docker-repro-longevity/workflow/measure.smk
Quentin Guilloteau ce977ceb9e now working on g5k
2024-08-29 18:16:12 +02:00

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2.6 KiB
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configfile: "config/config.yaml"
include: "utils.smk"
import os
ARTIFACTS_FOLDER_NICKEL = config["folder_artifacts_nickel"]
ARTIFACTS_FOLDER_JSON = config["folder_artifacts_json"]
SYSTEM = config["system"]
PREFIX = config["prefix"]
rule main:
input:
lambda w: expand(f"{PREFIX}/{{{{conference}}}}/build_status/{{artifact}}/{{{{date}}}}.csv",\
artifact=get_artifacts_to_build(ARTIFACTS_FOLDER_NICKEL + "/" + w['conference']))
output:
"{conference}_{date}.ok"
shell:
"echo {input} > {output}"
rule check_artifact:
input:
"flake.nix",
"flake.lock",
contract="workflow/nickel/artifact_contract.ncl",
artifact=f"{ARTIFACTS_FOLDER_NICKEL}/{{conference}}/{{artifact}}.ncl"
output:
f"{ARTIFACTS_FOLDER_JSON}/{{conference}}/{{artifact}}.json"
shell:
"""
nickel export --format json --output {output} <<< 'let {{Artifact, ..}} = import "{input.contract}" in ((import "{input.artifact}") | Artifact)'
"""
# ECG:
rule run_ecg:
input:
"flake.nix",
"flake.lock",
ecg="ecg/app/ecg.py",
execo_wrapper="workflow/scripts/submission_g5k.py",
oar_wrapper="workflow/scripts/ecg_oar_wrapper.oar.bash",
artifact=f"{ARTIFACTS_FOLDER_JSON}/{{conference}}/{{artifact}}.json"
output:
log = f"{PREFIX}/{{conference}}/logs/{{artifact}}/{{date}}.txt",
pkg = f"{PREFIX}/{{conference}}/pkgs/{{artifact}}/{{date}}.csv",
build_status = f"{PREFIX}/{{conference}}/build_status/{{artifact}}/{{date}}.csv",
artifact_hash = f"{PREFIX}/{{conference}}/artifact_hash/{{artifact}}/{{date}}.csv",
shell:
(f"python3 {{input.execo_wrapper}} --path {os.getcwd()} \
--script {{input.oar_wrapper}} \
--site {config['site']} \
--cluster {config['cluster']} \
--max-duration {config['max_duration']} \
--checkpoint {config['checkpoint']} \
{'--besteffort' if config['besteffort'] else ''} \
--sleep_time {config['sleep_time']} \
--build_status_file {{output.build_status}} \
--artifact {{wildcards.artifact}} -- '" if SYSTEM == "g5k" else "") + \
"nix shell .#ecg --command ecg -p {output.pkg} -b {output.build_status} -a {output.artifact_hash} -l {output.log} {input.artifact}" + \
("'" if SYSTEM == "g5k" else "echo \"{input.artifact}, `date +%s.%N`, script_crash\" > {output.build_status}")