Integrate my python-lsp-server PR

README.org

@@ -4403,17 +4403,16 @@ agree with [[https://black.readthedocs.io/en/stable/index.html][black's uncompro
 #+end_src
 
 [[https://jedi.readthedocs.io/en/latest/][Jedi]] provides grammar checking and completion candidates to [[https://github.com/python-lsp/python-lsp-server][python-lsp-server]].
-Only [[https://jedi.readthedocs.io/en/latest/docs/changelog.html][jedi-0.18.1]] works with for instance [[https://numpy.org/][numpy-1.23.3]] in the sense that it does
+Only [[https://jedi.readthedocs.io/en/latest/docs/changelog.html][jedi-0.18.1]] works with for instance [[https://numpy.org/][numpy-1.23.4]] in the sense that it does
 not choke on universal functions provided that [[https://jedi.readthedocs.io/en/latest/][jedi]] does not parse but import
-[[https://numpy.org/][numpy-1.23.3]] (see [[https://github.com/davidhalter/jedi/issues/1744][jedi issue #1744]], [[https://github.com/davidhalter/jedi/issues/1745][#1745]], and [[https://github.com/davidhalter/jedi/issues/1746][#1746]]).  Since the universal
+[[https://numpy.org/][numpy-1.23.4]] (see [[https://github.com/davidhalter/jedi/issues/1744][jedi issue #1744]], [[https://github.com/davidhalter/jedi/issues/1745][#1745]], and [[https://github.com/davidhalter/jedi/issues/1746][#1746]]).  Since the universal
 functions are neither builtin methods nor data instances but a kind of "callable
 instances", the [[https://docs.python.org/3/library/inspect.html][Python inspect]] module also fails to handle the universal
 functions properly.
 
-Listing [[lst:make-pylsp-server-patch]] generates and listing
+Listing [[lst:make-pylsp-server-patch]] generates the patch to make [[https://jedi.readthedocs.io/en/latest/][jedi]] import
-[[lst:show-pylsp-server-patch]] shows the patch to make [[https://jedi.readthedocs.io/en/latest/][jedi]] import [[https://numpy.org/][numpy-1.23.3]] in
+[[https://numpy.org/][numpy-1.23.4]] in order to obtain the necessary information to make
-order to obtain the necessary information to make [[https://github.com/python-lsp/python-lsp-server][python-lsp-server]] handle
+[[https://github.com/python-lsp/python-lsp-server][python-lsp-server]] handle universal functions.
-universal functions.
 
 #+caption[Make =pylsp-auto-import-modules.patch= listing]:
 #+caption: Make =pylsp-auto-import-modules.patch= listing.
@@ -4422,12 +4421,6 @@ universal functions.
   git -C $HOME/VCS/python-lsp-server diff >pylsp-auto-import-modules.patch
 #+end_src
 
-#+attr_latex: :options breaklines
-#+caption[Show =pylsp-auto-import-modules.patch=]:
-#+caption: Show =pylsp-auto-import-modules.patch=.
-#+name: lst:show-pylsp-server-patch
-#+include: "pylsp-auto-import-modules.patch" src diff
-
 *** [[https://jedi.readthedocs.io/en/latest/][Jedi]]
 :PROPERTIES:
 :CUSTOM_ID: sec:jedi

pylsp-auto-import-modules.patch

@@ -1,5 +1,17 @@
+diff --git a/CONFIGURATION.md b/CONFIGURATION.md
+index 61d500b..4cff0c9 100644
+--- a/CONFIGURATION.md
++++ b/CONFIGURATION.md
+@@ -16,6 +16,7 @@ This server can be configured using the `workspace/didChangeConfiguration` metho
+ | `pylsp.plugins.flake8.indentSize` | `integer` | Set indentation spaces. | `null` |
+ | `pylsp.plugins.flake8.perFileIgnores` | `array` of `string` items | A pairing of filenames and violation codes that defines which violations to ignore in a particular file, for example: `["file_path.py:W305,W304"]`). | `[]` |
+ | `pylsp.plugins.flake8.select` | `array` of unique `string` items | List of errors and warnings to enable. | `null` |
++| `pylsp.plugins.jedi.auto_import_modules` | `array` of `string` items | List of module names for jedi.settings.auto_import_modules. | `["numpy"]` |
+ | `pylsp.plugins.jedi.extra_paths` | `array` of `string` items | Define extra paths for jedi.Script. | `[]` |
+ | `pylsp.plugins.jedi.env_vars` | `object` | Define environment variables for jedi.Script and Jedi.names. | `null` |
+ | `pylsp.plugins.jedi.environment` | `string` | Define environment for jedi.Script and Jedi.names. | `null` |
 diff --git a/pylsp/config/schema.json b/pylsp/config/schema.json
-index bb82145..3c40d6a 100644
+index ee27b63..d210d0d 100644
 --- a/pylsp/config/schema.json
 +++ b/pylsp/config/schema.json
 @@ -87,6 +87,14 @@
@@ -8,7 +20,7 @@ index bb82145..3c40d6a 100644
      },
 +    "pylsp.plugins.jedi.auto_import_modules": {
 +      "type": "array",
-+      "default": ["numpy", "gi"],
++      "default": ["numpy"],
 +      "items": {
 +        "type": "string"
 +      },
@@ -18,14 +30,14 @@ index bb82145..3c40d6a 100644
        "type": "array",
        "default": [],
 diff --git a/pylsp/workspace.py b/pylsp/workspace.py
-index bf312f6..4758b53 100644
+index bf312f6..5e91221 100644
 --- a/pylsp/workspace.py
 +++ b/pylsp/workspace.py
 @@ -14,6 +14,8 @@ from . import lsp, uris, _utils
  
  log = logging.getLogger(__name__)
  
-+DEFAULT_AUTO_IMPORT_MODULES = ["numpy", "gi"]
++DEFAULT_AUTO_IMPORT_MODULES = ["numpy"]
 +
  # TODO: this is not the best e.g. we capture numbers
  RE_START_WORD = re.compile('[A-Za-z_0-9]*$')
@@ -39,3 +51,16 @@ index bf312f6..4758b53 100644
              environment_path = jedi_settings.get('environment')
              extra_paths = jedi_settings.get('extra_paths') or []
              env_vars = jedi_settings.get('env_vars')
+diff --git a/pyproject.toml b/pyproject.toml
+index 8607548..8cce90e 100644
+--- a/pyproject.toml
++++ b/pyproject.toml
+@@ -53,7 +53,7 @@ test = [
+     "pytest",
+     "pytest-cov",
+     "coverage",
+-    "numpy<1.23",
++    "numpy",
+     "pandas",
+     "matplotlib",
+     "pyqt5",