""" rewrite of lambdify - This stuff is not stable at all. It is for internal use in the new plotting module. It may (will! see the Q'n'A in the source) be rewritten. It's completely self contained. Especially it does not use lambdarepr. It does not aim to replace the current lambdify. Most importantly it will never ever support anything else than sympy expressions (no Matrices, dictionaries and so on). """ import re from sympy import Symbol, NumberSymbol, I, zoo, oo from sympy.utilities.iterables import numbered_symbols # We parse the expression string into a tree that identifies functions. Then # we translate the names of the functions and we translate also some strings # that are not names of functions (all this according to translation # dictionaries). # If the translation goes to another module (like numpy) the # module is imported and 'func' is translated to 'module.func'. # If a function can not be translated, the inner nodes of that part of the # tree are not translated. So if we have Integral(sqrt(x)), sqrt is not # translated to np.sqrt and the Integral does not crash. # A namespace for all this is generated by crawling the (func, args) tree of # the expression. The creation of this namespace involves many ugly # workarounds. # The namespace consists of all the names needed for the sympy expression and # all the name of modules used for translation. Those modules are imported only # as a name (import numpy as np) in order to keep the namespace small and # manageable. # Please, if there is a bug, do not try to fix it here! Rewrite this by using # the method proposed in the last Q'n'A below. That way the new function will # work just as well, be just as simple, but it wont need any new workarounds. # If you insist on fixing it here, look at the workarounds in the function # sympy_expression_namespace and in lambdify. # Q: Why are you not using python abstract syntax tree? # A: Because it is more complicated and not much more powerful in this case. # Q: What if I have Symbol('sin') or g=Function('f')? # A: You will break the algorithm. We should use srepr to defend against this? # The problem with Symbol('sin') is that it will be printed as 'sin'. The # parser will distinguish it from the function 'sin' because functions are # detected thanks to the opening parenthesis, but the lambda expression won't # understand the difference if we have also the sin function. # The solution (complicated) is to use srepr and maybe ast. # The problem with the g=Function('f') is that it will be printed as 'f' but in # the global namespace we have only 'g'. But as the same printer is used in the # constructor of the namespace there will be no problem. # Q: What if some of the printers are not printing as expected? # A: The algorithm wont work. You must use srepr for those cases. But even # srepr may not print well. All problems with printers should be considered # bugs. # Q: What about _imp_ functions? # A: Those are taken care for by evalf. A special case treatment will work # faster but it's not worth the code complexity. # Q: Will ast fix all possible problems? # A: No. You will always have to use some printer. Even srepr may not work in # some cases. But if the printer does not work, that should be considered a # bug. # Q: Is there same way to fix all possible problems? # A: Probably by constructing our strings ourself by traversing the (func, # args) tree and creating the namespace at the same time. That actually sounds # good. from sympy.external import import_module import warnings #TODO debugging output class vectorized_lambdify: """ Return a sufficiently smart, vectorized and lambdified function. Returns only reals. Explanation =========== This function uses experimental_lambdify to created a lambdified expression ready to be used with numpy. Many of the functions in sympy are not implemented in numpy so in some cases we resort to python cmath or even to evalf. The following translations are tried: only numpy complex - on errors raised by sympy trying to work with ndarray: only python cmath and then vectorize complex128 When using python cmath there is no need for evalf or float/complex because python cmath calls those. This function never tries to mix numpy directly with evalf because numpy does not understand sympy Float. If this is needed one can use the float_wrap_evalf/complex_wrap_evalf options of experimental_lambdify or better one can be explicit about the dtypes that numpy works with. Check numpy bug http://projects.scipy.org/numpy/ticket/1013 to know what types of errors to expect. """ def __init__(self, args, expr): self.args = args self.expr = expr self.np = import_module('numpy') self.lambda_func_1 = experimental_lambdify( args, expr, use_np=True) self.vector_func_1 = self.lambda_func_1 self.lambda_func_2 = experimental_lambdify( args, expr, use_python_cmath=True) self.vector_func_2 = self.np.vectorize( self.lambda_func_2, otypes=[complex]) self.vector_func = self.vector_func_1 self.failure = False def __call__(self, *args): np = self.np try: temp_args = (np.array(a, dtype=complex) for a in args) results = self.vector_func(*temp_args) results = np.ma.masked_where( np.abs(results.imag) > 1e-7 * np.abs(results), results.real, copy=False) return results except ValueError: if self.failure: raise self.failure = True self.vector_func = self.vector_func_2 warnings.warn( 'The evaluation of the expression is problematic. ' 'We are trying a failback method that may still work. ' 'Please report this as a bug.') return self.__call__(*args) class lambdify: """Returns the lambdified function. Explanation =========== This function uses experimental_lambdify to create a lambdified expression. It uses cmath to lambdify the expression. If the function is not implemented in python cmath, python cmath calls evalf on those functions. """ def __init__(self, args, expr): self.args = args self.expr = expr self.lambda_func_1 = experimental_lambdify( args, expr, use_python_cmath=True, use_evalf=True) self.lambda_func_2 = experimental_lambdify( args, expr, use_python_math=True, use_evalf=True) self.lambda_func_3 = experimental_lambdify( args, expr, use_evalf=True, complex_wrap_evalf=True) self.lambda_func = self.lambda_func_1 self.failure = False def __call__(self, args): try: #The result can be sympy.Float. Hence wrap it with complex type. result = complex(self.lambda_func(args)) if abs(result.imag) > 1e-7 * abs(result): return None return result.real except (ZeroDivisionError, OverflowError, TypeError) as e: if isinstance(e, ZeroDivisionError) or isinstance(e, OverflowError): return None if self.failure: raise e if self.lambda_func == self.lambda_func_1: self.lambda_func = self.lambda_func_2 return self.__call__(args) self.failure = True self.lambda_func = self.lambda_func_3 warnings.warn( 'The evaluation of the expression is problematic. ' 'We are trying a failback method that may still work. ' 'Please report this as a bug.') return self.__call__(args) def experimental_lambdify(*args, **kwargs): l = Lambdifier(*args, **kwargs) return l class Lambdifier: def __init__(self, args, expr, print_lambda=False, use_evalf=False, float_wrap_evalf=False, complex_wrap_evalf=False, use_np=False, use_python_math=False, use_python_cmath=False, use_interval=False): self.print_lambda = print_lambda self.use_evalf = use_evalf self.float_wrap_evalf = float_wrap_evalf self.complex_wrap_evalf = complex_wrap_evalf self.use_np = use_np self.use_python_math = use_python_math self.use_python_cmath = use_python_cmath self.use_interval = use_interval # Constructing the argument string # - check if not all([isinstance(a, Symbol) for a in args]): raise ValueError('The arguments must be Symbols.') # - use numbered symbols syms = numbered_symbols(exclude=expr.free_symbols) newargs = [next(syms) for _ in args] expr = expr.xreplace(dict(zip(args, newargs))) argstr = ', '.join([str(a) for a in newargs]) del syms, newargs, args # Constructing the translation dictionaries and making the translation self.dict_str = self.get_dict_str() self.dict_fun = self.get_dict_fun() exprstr = str(expr) newexpr = self.tree2str_translate(self.str2tree(exprstr)) # Constructing the namespaces namespace = {} namespace.update(self.sympy_atoms_namespace(expr)) namespace.update(self.sympy_expression_namespace(expr)) # XXX Workaround # Ugly workaround because Pow(a,Half) prints as sqrt(a) # and sympy_expression_namespace can not catch it. from sympy import sqrt namespace.update({'sqrt': sqrt}) namespace.update({'Eq': lambda x, y: x == y}) namespace.update({'Ne': lambda x, y: x != y}) # End workaround. if use_python_math: namespace.update({'math': __import__('math')}) if use_python_cmath: namespace.update({'cmath': __import__('cmath')}) if use_np: try: namespace.update({'np': __import__('numpy')}) except ImportError: raise ImportError( 'experimental_lambdify failed to import numpy.') if use_interval: namespace.update({'imath': __import__( 'sympy.plotting.intervalmath', fromlist=['intervalmath'])}) namespace.update({'math': __import__('math')}) # Construct the lambda if self.print_lambda: print(newexpr) eval_str = 'lambda %s : ( %s )' % (argstr, newexpr) self.eval_str = eval_str exec("from __future__ import division; MYNEWLAMBDA = %s" % eval_str, namespace) self.lambda_func = namespace['MYNEWLAMBDA'] def __call__(self, *args, **kwargs): return self.lambda_func(*args, **kwargs) ############################################################################## # Dicts for translating from sympy to other modules ############################################################################## ### # builtins ### # Functions with different names in builtins builtin_functions_different = { 'Min': 'min', 'Max': 'max', 'Abs': 'abs', } # Strings that should be translated builtin_not_functions = { 'I': '1j', # 'oo': '1e400', } ### # numpy ### # Functions that are the same in numpy numpy_functions_same = [ 'sin', 'cos', 'tan', 'sinh', 'cosh', 'tanh', 'exp', 'log', 'sqrt', 'floor', 'conjugate', ] # Functions with different names in numpy numpy_functions_different = { "acos": "arccos", "acosh": "arccosh", "arg": "angle", "asin": "arcsin", "asinh": "arcsinh", "atan": "arctan", "atan2": "arctan2", "atanh": "arctanh", "ceiling": "ceil", "im": "imag", "ln": "log", "Max": "amax", "Min": "amin", "re": "real", "Abs": "abs", } # Strings that should be translated numpy_not_functions = { 'pi': 'np.pi', 'oo': 'np.inf', 'E': 'np.e', } ### # python math ### # Functions that are the same in math math_functions_same = [ 'sin', 'cos', 'tan', 'asin', 'acos', 'atan', 'atan2', 'sinh', 'cosh', 'tanh', 'asinh', 'acosh', 'atanh', 'exp', 'log', 'erf', 'sqrt', 'floor', 'factorial', 'gamma', ] # Functions with different names in math math_functions_different = { 'ceiling': 'ceil', 'ln': 'log', 'loggamma': 'lgamma' } # Strings that should be translated math_not_functions = { 'pi': 'math.pi', 'E': 'math.e', } ### # python cmath ### # Functions that are the same in cmath cmath_functions_same = [ 'sin', 'cos', 'tan', 'asin', 'acos', 'atan', 'sinh', 'cosh', 'tanh', 'asinh', 'acosh', 'atanh', 'exp', 'log', 'sqrt', ] # Functions with different names in cmath cmath_functions_different = { 'ln': 'log', 'arg': 'phase', } # Strings that should be translated cmath_not_functions = { 'pi': 'cmath.pi', 'E': 'cmath.e', } ### # intervalmath ### interval_not_functions = { 'pi': 'math.pi', 'E': 'math.e' } interval_functions_same = [ 'sin', 'cos', 'exp', 'tan', 'atan', 'log', 'sqrt', 'cosh', 'sinh', 'tanh', 'floor', 'acos', 'asin', 'acosh', 'asinh', 'atanh', 'Abs', 'And', 'Or' ] interval_functions_different = { 'Min': 'imin', 'Max': 'imax', 'ceiling': 'ceil', } ### # mpmath, etc ### #TODO ### # Create the final ordered tuples of dictionaries ### # For strings def get_dict_str(self): dict_str = dict(self.builtin_not_functions) if self.use_np: dict_str.update(self.numpy_not_functions) if self.use_python_math: dict_str.update(self.math_not_functions) if self.use_python_cmath: dict_str.update(self.cmath_not_functions) if self.use_interval: dict_str.update(self.interval_not_functions) return dict_str # For functions def get_dict_fun(self): dict_fun = dict(self.builtin_functions_different) if self.use_np: for s in self.numpy_functions_same: dict_fun[s] = 'np.' + s for k, v in self.numpy_functions_different.items(): dict_fun[k] = 'np.' + v if self.use_python_math: for s in self.math_functions_same: dict_fun[s] = 'math.' + s for k, v in self.math_functions_different.items(): dict_fun[k] = 'math.' + v if self.use_python_cmath: for s in self.cmath_functions_same: dict_fun[s] = 'cmath.' + s for k, v in self.cmath_functions_different.items(): dict_fun[k] = 'cmath.' + v if self.use_interval: for s in self.interval_functions_same: dict_fun[s] = 'imath.' + s for k, v in self.interval_functions_different.items(): dict_fun[k] = 'imath.' + v return dict_fun ############################################################################## # The translator functions, tree parsers, etc. ############################################################################## def str2tree(self, exprstr): """Converts an expression string to a tree. Explanation =========== Functions are represented by ('func_name(', tree_of_arguments). Other expressions are (head_string, mid_tree, tail_str). Expressions that do not contain functions are directly returned. Examples ======== >>> from sympy.abc import x, y, z >>> from sympy import Integral, sin >>> from sympy.plotting.experimental_lambdify import Lambdifier >>> str2tree = Lambdifier([x], x).str2tree >>> str2tree(str(Integral(x, (x, 1, y)))) ('', ('Integral(', 'x, (x, 1, y)'), ')') >>> str2tree(str(x+y)) 'x + y' >>> str2tree(str(x+y*sin(z)+1)) ('x + y*', ('sin(', 'z'), ') + 1') >>> str2tree('sin(y*(y + 1.1) + (sin(y)))') ('', ('sin(', ('y*(y + 1.1) + (', ('sin(', 'y'), '))')), ')') """ #matches the first 'function_name(' first_par = re.search(r'(\w+\()', exprstr) if first_par is None: return exprstr else: start = first_par.start() end = first_par.end() head = exprstr[:start] func = exprstr[start:end] tail = exprstr[end:] count = 0 for i, c in enumerate(tail): if c == '(': count += 1 elif c == ')': count -= 1 if count == -1: break func_tail = self.str2tree(tail[:i]) tail = self.str2tree(tail[i:]) return (head, (func, func_tail), tail) @classmethod def tree2str(cls, tree): """Converts a tree to string without translations. Examples ======== >>> from sympy.abc import x, y, z >>> from sympy import sin >>> from sympy.plotting.experimental_lambdify import Lambdifier >>> str2tree = Lambdifier([x], x).str2tree >>> tree2str = Lambdifier([x], x).tree2str >>> tree2str(str2tree(str(x+y*sin(z)+1))) 'x + y*sin(z) + 1' """ if isinstance(tree, str): return tree else: return ''.join(map(cls.tree2str, tree)) def tree2str_translate(self, tree): """Converts a tree to string with translations. Explanation =========== Function names are translated by translate_func. Other strings are translated by translate_str. """ if isinstance(tree, str): return self.translate_str(tree) elif isinstance(tree, tuple) and len(tree) == 2: return self.translate_func(tree[0][:-1], tree[1]) else: return ''.join([self.tree2str_translate(t) for t in tree]) def translate_str(self, estr): """Translate substrings of estr using in order the dictionaries in dict_tuple_str.""" for pattern, repl in self.dict_str.items(): estr = re.sub(pattern, repl, estr) return estr def translate_func(self, func_name, argtree): """Translate function names and the tree of arguments. Explanation =========== If the function name is not in the dictionaries of dict_tuple_fun then the function is surrounded by a float((...).evalf()). The use of float is necessary as np.(sympy.Float(..)) raises an error.""" if func_name in self.dict_fun: new_name = self.dict_fun[func_name] argstr = self.tree2str_translate(argtree) return new_name + '(' + argstr elif func_name in ['Eq', 'Ne']: op = {'Eq': '==', 'Ne': '!='} return "(lambda x, y: x {} y)({}".format(op[func_name], self.tree2str_translate(argtree)) else: template = '(%s(%s)).evalf(' if self.use_evalf else '%s(%s' if self.float_wrap_evalf: template = 'float(%s)' % template elif self.complex_wrap_evalf: template = 'complex(%s)' % template # Wrapping should only happen on the outermost expression, which # is the only thing we know will be a number. float_wrap_evalf = self.float_wrap_evalf complex_wrap_evalf = self.complex_wrap_evalf self.float_wrap_evalf = False self.complex_wrap_evalf = False ret = template % (func_name, self.tree2str_translate(argtree)) self.float_wrap_evalf = float_wrap_evalf self.complex_wrap_evalf = complex_wrap_evalf return ret ############################################################################## # The namespace constructors ############################################################################## @classmethod def sympy_expression_namespace(cls, expr): """Traverses the (func, args) tree of an expression and creates a sympy namespace. All other modules are imported only as a module name. That way the namespace is not polluted and rests quite small. It probably causes much more variable lookups and so it takes more time, but there are no tests on that for the moment.""" if expr is None: return {} else: funcname = str(expr.func) # XXX Workaround # Here we add an ugly workaround because str(func(x)) # is not always the same as str(func). Eg # >>> str(Integral(x)) # "Integral(x)" # >>> str(Integral) # "" # >>> str(sqrt(x)) # "sqrt(x)" # >>> str(sqrt) # "" # >>> str(sin(x)) # "sin(x)" # >>> str(sin) # "sin" # Either one of those can be used but not all at the same time. # The code considers the sin example as the right one. regexlist = [ r'$', # the example Integral r'$', # the example sqrt ] for r in regexlist: m = re.match(r, funcname) if m is not None: funcname = m.groups()[0] # End of the workaround # XXX debug: print funcname args_dict = {} for a in expr.args: if (isinstance(a, Symbol) or isinstance(a, NumberSymbol) or a in [I, zoo, oo]): continue else: args_dict.update(cls.sympy_expression_namespace(a)) args_dict.update({funcname: expr.func}) return args_dict @staticmethod def sympy_atoms_namespace(expr): """For no real reason this function is separated from sympy_expression_namespace. It can be moved to it.""" atoms = expr.atoms(Symbol, NumberSymbol, I, zoo, oo) d = {} for a in atoms: # XXX debug: print 'atom:' + str(a) d[str(a)] = a return d