From d7391e35c05c439b3628b07fbd7c18439fc7845c Mon Sep 17 00:00:00 2001
From: Samuel Ortion <samuel+git@ortion.fr>
Date: Sat, 19 Aug 2023 07:20:51 +0200
Subject: [PATCH 1/3] Add scala to path

---
 .loadenv.sh | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/.loadenv.sh b/.loadenv.sh
index 376f7e4..98a9247 100644
--- a/.loadenv.sh
+++ b/.loadenv.sh
@@ -1,4 +1,4 @@
-export PATH="/home/$USER/.luarocks/bin:/home/$USER/.julia/bin:/home/$USER/.cargo/bin:/usr/local/bin:/usr/local/sbin:/usr/bin:/usr/sbin:/home/$USER/.local/bin:/home/$USER/bin:/home/$USER/Documents/cours/tools/bin/:/usr/games/:/home/$USER/.config/emacs/bin/:/usr/local/cuda/bin//"
+export PATH="/home/$USER/.luarocks/bin:/home/$USER/.julia/bin:/home/$USER/.cargo/bin:/usr/local/bin:/usr/local/sbin:/usr/bin:/usr/sbin:/home/$USER/.local/bin:/home/$USER/bin:/home/$USER/Documents/cours/tools/bin/:/usr/games/:/home/$USER/.config/emacs/bin/:/usr/local/cuda/bin/:/home/$USER/.local/share/coursier/bin/"
 
 # export EDITOR=vim
 export ALTERNATE_EDITOR=""

From e74e5623ae5ff7384ec9c7f1263624df111d101b Mon Sep 17 00:00:00 2001
From: Samuel Ortion <samuel+git@ortion.fr>
Date: Sat, 2 Dec 2023 18:12:17 +0100
Subject: [PATCH 3/3] feat: Leon dotfiles

---
 .aliases         | 13 ++++++------
 .bash_profile    | 12 +++++++++++
 .bashrc          | 28 ++++++++++++++++++++++++++
 .gitignore       |  1 +
 .latexmkrc       |  7 +++----
 .loadenv.sh      |  9 ++++++++-
 .profile         | 26 ------------------------
 .vimrc           |  3 +++
 Makefile         |  3 ---
 README.md        |  2 ++
 fish/config.fish | 39 ++++++++++++++++++++++++++++++++++++
 starship.toml    | 52 ++++++++++++++++++++++++++++++++++++++++++++++++
 12 files changed, 155 insertions(+), 40 deletions(-)
 create mode 100644 .bash_profile
 create mode 100644 .bashrc
 create mode 100644 README.md
 create mode 100644 fish/config.fish
 create mode 100644 starship.toml

diff --git a/.aliases b/.aliases
index 6426d02..0999900 100644
--- a/.aliases
+++ b/.aliases
@@ -3,9 +3,10 @@ alias o="xdg-open"
 alias pro="cd ~/Documents/Projects"
 alias doc="cd ~/Documents"
 alias vim="nvim"
-alias int="cd ~/Documents/cours/licence/L3/stage/pasteur/projects/"
+alias int="cd ~/Documents/course/licence/L3/stage/pasteur/projects/"
+alias pdf="latexmk -pdf"
 alias blog="cd ~/Documents/Projects/myself/log/"
-alias cours="cd ~/Documents/cours/master/M1/S1/"
+alias course="cd ~/Documents/course/master/M1/S1/"
 
 # Print field name from header with the field rank 
 csv_fields() {
@@ -18,10 +19,10 @@ csv_fields() {
 
 alias edit="$VISUAL"
 
-export templates_dir="~/Documents/Projects/templates"
-alias new.td='copier "$templates_dir/latex/td.template"'
-alias new.cm='copier "$templates_dir/latex/cm.template"'
-alias new.letter='copier "$templates_dir/latex/letter.template"'
+export templates_dir="/home/$USER/Documents/Projects/templates"
+alias new.td='copier copy --trust "$templates_dir/latex/td.template"'
+alias new.cm='copier copy --trust "$templates_dir/latex/cm.template"'
+alias new.letter='copier copy --trust "$templates_dir/latex/letter.template"'
 
 pdfcompress () {
    gs -q -dNOPAUSE -dBATCH -dSAFER -sDEVICE=pdfwrite -dCompatibilityLevel=1.3 -dPDFSETTINGS=/screen -dEmbedAllFonts=true -dSubsetFonts=true -dColorImageDownsampleType=/Bicubic -dColorImageResolution=144 -dGrayImageDownsampleType=/Bicubic -dGrayImageResolution=144 -dMonoImageDownsampleType=/Bicubic -dMonoImageResolution=144 -sOutputFile="$2" "$1"; 
diff --git a/.bash_profile b/.bash_profile
new file mode 100644
index 0000000..fee7c10
--- /dev/null
+++ b/.bash_profile
@@ -0,0 +1,12 @@
+# .bash_profile
+
+# Get the aliases and functions
+if [ -f ~/.bashrc ]; then
+	. ~/.bashrc
+fi
+
+# User specific environment and startup programs
+
+PATH=$PATH:$HOME/.local/bin:$HOME/bin
+
+export PATH
\ No newline at end of file
diff --git a/.bashrc b/.bashrc
new file mode 100644
index 0000000..b95ddec
--- /dev/null
+++ b/.bashrc
@@ -0,0 +1,28 @@
+# .bashrc
+
+# Source global definitions
+if [ -f /etc/bashrc ]; then
+	. /etc/bashrc
+fi
+
+# User specific environment
+if ! [[ "$PATH" =~ "$HOME/.local/bin:$HOME/bin:" ]]
+then
+    PATH="$HOME/.local/bin:$HOME/bin:$PATH"
+fi
+export PATH
+
+# Uncomment the following line if you don't like systemctl's auto-paging feature:
+# export SYSTEMD_PAGER=
+
+# User specific aliases and functions
+if [ -d ~/.bashrc.d ]; then
+	for rc in ~/.bashrc.d/*; do
+		if [ -f "$rc" ]; then
+			. "$rc"
+		fi
+	done
+fi
+
+unset rc
+
diff --git a/.gitignore b/.gitignore
index e922891..f4cfece 100644
--- a/.gitignore
+++ b/.gitignore
@@ -1 +1,2 @@
 antigen/
+.vscode/
diff --git a/.latexmkrc b/.latexmkrc
index ad341c4..384a37a 100644
--- a/.latexmkrc
+++ b/.latexmkrc
@@ -5,8 +5,7 @@ $hash_calc_ignore_pattern{aux} =
 
 $pdflatex =
 'lualatex -shell-escape -file-line-error -interaction=nonstopmode -synctex=1 -output-directory=build %O '
-  . '\'\PassOptionsToPackage{outputdir=build}{minted}\input{%S}\''
-  . '| texlogsieve';
+  . '\'\PassOptionsToPackage{outputdir=build}{minted}\input{%S}\'';
 $aux_dir    = 'build';
 $bibtex_use = 2;
 
@@ -34,8 +33,8 @@ sub biber {
     return system "biber", @args;
 }
 
-$silent                   = 1;    # This adds "-interaction batchmode"
-$silence_logfile_warnings = 1;
+# $silent                   = 1;    # This adds "-interaction batchmode"
+# $silence_logfile_warnings = 1;
 
 END {
     local $?;                     # do not override previous exit status
diff --git a/.loadenv.sh b/.loadenv.sh
index 98a9247..d204d1f 100644
--- a/.loadenv.sh
+++ b/.loadenv.sh
@@ -1,4 +1,4 @@
-export PATH="/home/$USER/.luarocks/bin:/home/$USER/.julia/bin:/home/$USER/.cargo/bin:/usr/local/bin:/usr/local/sbin:/usr/bin:/usr/sbin:/home/$USER/.local/bin:/home/$USER/bin:/home/$USER/Documents/cours/tools/bin/:/usr/games/:/home/$USER/.config/emacs/bin/:/usr/local/cuda/bin/:/home/$USER/.local/share/coursier/bin/"
+export PATH="/home/$USER/.luarocks/bin:/home/$USER/.julia/bin:/home/$USER/.cargo/bin:/usr/local/bin:/usr/local/sbin:/usr/bin:/usr/sbin:/home/$USER/.local/bin:/home/$USER/bin:/home/$USER/Documents/cours/tools/bin/:/usr/games/:/home/$USER/.config/emacs/bin/:/usr/local/cuda/bin/:/home/$USER/.local/share/coursier/bin/:/opt/quarto/bin/:/home/$USER/Documents/course/tools/bin/"
 
 # export EDITOR=vim
 export ALTERNATE_EDITOR=""
@@ -36,3 +36,10 @@ if [ -f "/home/$USER/.local/share/mambaforge/etc/profile.d/mamba.sh" ]; then
 	. "/home/$USER/.local/share/mambaforge/etc/profile.d/mamba.sh"
 fi
 # <<< conda initialize <<<
+
+# Init Guix
+if command -v guix  &> /dev/null
+then
+    GUIX_PROFILE="$HOME/.config/guix/current"
+    . "$GUIX_PROFILE/etc/profile"
+fi
diff --git a/.profile b/.profile
index 1279183..a8b47ec 100644
--- a/.profile
+++ b/.profile
@@ -18,29 +18,3 @@ if [ -x /usr/bin/fortune ] ; then
     echo
 fi
 
-# This file is not read by bash(1), if ~/.bash_profile or ~/.bash_login
-# exists.
-# see /usr/share/doc/bash/examples/startup-files for examples.
-# the files are located in the bash-doc package.
-
-# the default umask is set in /etc/profile; for setting the umask
-# for ssh logins, install and configure the libpam-umask package.
-#umask 022
-
-# if running bash
-if [ -n "$BASH_VERSION" ]; then
-    # include .bashrc if it exists
-    if [ -f "$HOME/.bashrc" ]; then
-        . "$HOME/.bashrc"
-    fi
-fi
-
-# set PATH so it includes user's private bin if it exists
-if [ -d "$HOME/bin" ] ; then
-    PATH="$HOME/bin:$PATH"
-fi
-
-# set PATH so it includes user's private bin if it exists
-if [ -d "$HOME/.local/bin" ] ; then
-    PATH="$HOME/.local/bin:$PATH"
-fi
diff --git a/.vimrc b/.vimrc
index 85e61e5..444e1ac 100644
--- a/.vimrc
+++ b/.vimrc
@@ -1,4 +1,5 @@
 " My Own vimrc"
+
 set nocompatible
 
 filetype on
@@ -13,6 +14,8 @@ set number
 
 set cursorline
 
+" set cursorcolumn"
+
 set tabstop=4
 
 set expandtab
diff --git a/Makefile b/Makefile
index 6dfd420..67533b3 100644
--- a/Makefile
+++ b/Makefile
@@ -23,9 +23,6 @@ fish:
 nvim:	
 	git clone ssh://gitea@forge.chapril.org:222/sortion/nvim.conf ~/.config/nvim/
 
-emacs:
-	git clone ssh://gitea@forge.chapril.org:222/sortion/.emacs.d.git ~/.emacs.d/
-
 antigen:
 	git clone https://github.com/zsh-users/antigen.git
 
diff --git a/README.md b/README.md
new file mode 100644
index 0000000..6a819db
--- /dev/null
+++ b/README.md
@@ -0,0 +1,2 @@
+# .dotfiles
+My dotfiles
diff --git a/fish/config.fish b/fish/config.fish
new file mode 100644
index 0000000..1fa06b7
--- /dev/null
+++ b/fish/config.fish
@@ -0,0 +1,39 @@
+function fish_greeting
+    fortune
+end
+
+function !!
+    set var (history | head -n 1)
+    if test $argv
+        if test $argv = sudo #; or "any other command you want to prepend"
+            eval $argv $var
+        else
+            eval $var $argv
+        end
+    else
+        eval $var
+    end
+end
+
+set path_append "/home/sortion/.luarocks/bin:/home/sortion/.julia/bin:/home/sortion/.cargo/bin:/usr/local/bin:/usr/local/sbin:/usr/bin:/usr/sbin:/opt/quarto/quarto-1.2.335/bin:/home/sortion/.local/bin::/home/sortion/Documents/cours/tools/bin/"
+for path in (string split ":" $path_append)
+    fish_add_path $path
+end
+
+# >>> conda initialize >>>
+# !! Contents within this block are managed by 'conda init' !!
+if test -f /home/sortion/.local/share/mambaforge/bin/conda
+    eval /home/sortion/.local/share/mambaforge/bin/conda "shell.fish" hook $argv | source
+end
+
+if test -f "/home/sortion/.local/share/mambaforge/etc/fish/conf.d/mamba.fish"
+    source "/home/sortion/.local/share/mambaforge/etc/fish/conf.d/mamba.fish"
+end
+# <<< conda initialize <<
+
+function __conda_add_prompt
+end # Avoid conda prompt
+
+source ~/.aliases.fish
+
+starship init fish | source
diff --git a/starship.toml b/starship.toml
new file mode 100644
index 0000000..893e049
--- /dev/null
+++ b/starship.toml
@@ -0,0 +1,52 @@
+format = """
+$username\
+$hostname\
+$directory\
+$git_branch\
+$git_state\
+$git_status\
+$cmd_duration\
+$fill $conda$python\
+$line_break\
+$character"""
+
+[directory]
+style = "bright-blue"
+
+[character]
+success_symbol = "[❯](purple)"
+error_symbol = "[❯](red)"
+vimcmd_symbol = "[❮](green)"
+
+[git_branch]
+format = "[$branch]($style)"
+style = "bright-black"
+
+[git_status]
+format = "[[(*$conflicted$untracked$modified$staged$renamed$deleted)](218) ($ahead_behind$stashed)]($style)"
+style = "cyan"
+conflicted = "​"
+untracked = "​"
+modified = "​"
+staged = "​"
+renamed = "​"
+deleted = "​"
+stashed = "≡"
+
+[git_state]
+format = '\([$state( $progress_current/$progress_total)]($style)\) '
+style = "bright-black"
+
+[cmd_duration]
+format = "[$duration]($style) "
+style = "yellow"
+
+[python]
+format = "[$symbol$virtualenv]($style) "
+style = "bright-black"
+
+[conda]
+format = '[$symbol$environment](bright-green) '
+
+[fill]
+symbol = " "