From 8f91a8163b009d9727fb43247542636e7fb08f42 Mon Sep 17 00:00:00 2001
From: Samuel Ortion <samuel+git@ortion.fr>
Date: Wed, 16 Aug 2023 08:41:12 +0200
Subject: [PATCH] feat: Add lp-mouse, and amended latexmkrc

---
 .aliases              | 12 ++++----
 .gitmodules           |  3 ++
 .latexmkrc            | 70 ++++++++++++++++++++++++++++++++++++-------
 .loadenv.sh           |  6 ++--
 .zshrc                |  8 +++--
 liquidprompt/lp-mouse |  1 +
 6 files changed, 79 insertions(+), 21 deletions(-)
 create mode 100644 .gitmodules
 create mode 160000 liquidprompt/lp-mouse

diff --git a/.aliases b/.aliases
index a79895d..6426d02 100644
--- a/.aliases
+++ b/.aliases
@@ -1,11 +1,11 @@
-alias o="evince2"
+alias o="xdg-open"
 
 alias pro="cd ~/Documents/Projects"
 alias doc="cd ~/Documents"
-alias activenv="mamba activate hic2023py3.11"
-
+alias vim="nvim"
 alias int="cd ~/Documents/cours/licence/L3/stage/pasteur/projects/"
 alias blog="cd ~/Documents/Projects/myself/log/"
+alias cours="cd ~/Documents/cours/master/M1/S1/"
 
 # Print field name from header with the field rank 
 csv_fields() {
@@ -16,6 +16,8 @@ csv_fields() {
   head -n 1 "${file}" | tr "${delimiter}" "\n" | awk '{print NR, $0}'
 }
 
+alias edit="$VISUAL"
+
 export templates_dir="~/Documents/Projects/templates"
 alias new.td='copier "$templates_dir/latex/td.template"'
 alias new.cm='copier "$templates_dir/latex/cm.template"'
@@ -25,6 +27,6 @@ pdfcompress () {
    gs -q -dNOPAUSE -dBATCH -dSAFER -sDEVICE=pdfwrite -dCompatibilityLevel=1.3 -dPDFSETTINGS=/screen -dEmbedAllFonts=true -dSubsetFonts=true -dColorImageDownsampleType=/Bicubic -dColorImageResolution=144 -dGrayImageDownsampleType=/Bicubic -dGrayImageResolution=144 -dMonoImageDownsampleType=/Bicubic -dMonoImageResolution=144 -sOutputFile="$2" "$1"; 
 }
 
-colorinvert() {                                                                 convert "$1" -channel RGB -negate "$(echo $1 | sed 's/\./-inv\./')"
-
+colorinvert() {
+    convert "$1" -channel RGB -negate "$(echo $1 | sed 's/\./-inv\./')"
 }
diff --git a/.gitmodules b/.gitmodules
new file mode 100644
index 0000000..94c1f8c
--- /dev/null
+++ b/.gitmodules
@@ -0,0 +1,3 @@
+[submodule "liquidprompt/lp-mouse"]
+	path = liquidprompt/lp-mouse
+	url = git@github.com:UncleSamulus/lp-mouse.git
diff --git a/.latexmkrc b/.latexmkrc
index 20c452a..ad341c4 100644
--- a/.latexmkrc
+++ b/.latexmkrc
@@ -1,24 +1,72 @@
-# Minted
-&set_tex_cmds( '-shell-escape %O '
-        . '\'\PassOptionsToPackage{outputdir={%Y}}{minted}\input{%S}\''
-        );
+$hash_calc_ignore_pattern{aux} =
+    '^\\\\gdef\\\\minted@oldcachelist\{,'
+  . '|^\s*default\.pygstyle,'
+  . '|^\s*[[:xdigit:]]+\.pygtex';
 
-$pdflatex = 'lualatex -shell-escape -file-line-error -interaction=nonstopmode -synctex=1 -output-directory=build %O %S | texlogsieve';
-$aux_dir = 'build';
+$pdflatex =
+'lualatex -shell-escape -file-line-error -interaction=nonstopmode -synctex=1 -output-directory=build %O '
+  . '\'\PassOptionsToPackage{outputdir=build}{minted}\input{%S}\''
+  . '| texlogsieve';
+$aux_dir    = 'build';
 $bibtex_use = 2;
+
 # Amend cleaned extensions
 $clean_ext .= " fdb_latexmk run.xml synctex.gz";
+
 # Make latexmk quiet
 $latexmk_silent = 1;
 
 # Makeglossaries
-add_cus_dep('acn', 'acr', 0, 'makeglossaries');
-add_cus_dep('glo', 'gls', 0, 'makeglossaries');
+add_cus_dep( 'acn', 'acr', 0, 'makeglossaries' );
+add_cus_dep( 'glo', 'gls', 0, 'makeglossaries' );
 $clean_ext .= " acr acn alg glo gls glg";
 
 sub makeglossaries {
-    my ($base_name, $path) = fileparse( $_[0] );
+    my ( $base_name, $path ) = fileparse( $_[0] );
     my @args = ( "-q", "-d", $path, $base_name );
     if ($silent) { unshift @args, "-q"; }
-    return system "makeglossaries", "-d", $path, $base_name; 
-}
\ No newline at end of file
+    return system "makeglossaries", "-d", $path, $base_name;
+}
+
+sub biber {
+    my ( $base_name, $path ) = fileparse( $_[0] );
+    my @args = ( "--output-directory", $path, $base_name );
+    return system "biber", @args;
+}
+
+$silent                   = 1;    # This adds "-interaction batchmode"
+$silence_logfile_warnings = 1;
+
+END {
+    local $?;                     # do not override previous exit status
+    if ( -s "$root_filename.blg" and open my $bibfile,
+        '<', "$root_filename.blg" )
+    {
+        print("**********************\n");
+        print("bibtex/biber messages:\n");
+        while ( my $line = <$bibfile> ) {
+            if ( $line =~ /You.ve used/ ) {
+                last;
+            }
+            else {
+                print($line);
+            }
+        }
+        close($bibfile);
+    }
+    if ( -s "$root_filename.ilg" and open my $indfile,
+        '<', "$root_filename.ilg" )
+    {
+        print("*************************\n");
+        print("makeindex/xindy messages:\n");
+        while ( my $line = <$indfile> ) {
+            print($line);
+        }
+        close($indfile);
+    }
+    if ( -s "$root_filename.log" ) {
+        print("***************\n");
+        print("LaTeX messages:\n");
+        Run_subst("texlogsieve %R.log");
+    }
+}
diff --git a/.loadenv.sh b/.loadenv.sh
index efeb62e..376f7e4 100644
--- a/.loadenv.sh
+++ b/.loadenv.sh
@@ -1,9 +1,9 @@
-export PATH="/home/$USER/.luarocks/bin:/home/$USER/.julia/bin:/home/$USER/.cargo/bin:/usr/local/bin:/usr/local/sbin:/usr/bin:/usr/sbin:/home/$USER/.local/bin:/home/$USER/bin:/home/$USER/Documents/cours/tools/bin/:/usr/games/:/home/$USER/.config/emacs/bin/"
+export PATH="/home/$USER/.luarocks/bin:/home/$USER/.julia/bin:/home/$USER/.cargo/bin:/usr/local/bin:/usr/local/sbin:/usr/bin:/usr/sbin:/home/$USER/.local/bin:/home/$USER/bin:/home/$USER/Documents/cours/tools/bin/:/usr/games/:/home/$USER/.config/emacs/bin/:/usr/local/cuda/bin//"
 
 # export EDITOR=vim
 export ALTERNATE_EDITOR=""
-export EDITOR="emacsclient -t"                  # $EDITOR opens in terminal
-export VISUAL="emacsclient -c -a emacs"         # $VISUAL opens in GUI mode
+export EDITOR="emacsclient -t"              # $EDITOR opens in terminal
+export VISUAL="emacsclient -fs -c -a emacs" # $VISUAL opens in GUI mode
 
 # nvm
 export NVM_DIR="$([ -z "${XDG_CONFIG_HOME-}" ] && printf %s "${HOME}/.nvm" || printf %s "${XDG_CONFIG_HOME}/nvm")"
diff --git a/.zshrc b/.zshrc
index b143d53..3a9d56d 100644
--- a/.zshrc
+++ b/.zshrc
@@ -1,9 +1,9 @@
 autoload antigen
 
-source ~/.aliases
-
 source ~/.loadenv.sh
 
+source ~/.aliases
+
 source ~/.dotfiles/antigen/antigen.zsh
 
 antigen use oh-my-zsh
@@ -34,8 +34,12 @@ source ~/.antigen/bundles/nojhan/liquidprompt/liquidprompt
 
 # source ~/.antigen/bundles/nojhan/liquidprompt/themes/powerline/powerline.theme && lp_theme powerline
 
+source ~/.dotfiles/liquidprompt/lp-mouse/preset.conf
+
 source ~/.antigen/bundles/nojhan/lp-dotmatrix/presets/variant-chevron.conf
 
+source  ~/.antigen/bundles/nojhan/lp-dotmatrix/presets/colors_green-red.conf 
+
 source ~/.antigen/bundles/nojhan/lp-dotmatrix/dotmatrix.theme && lp_theme dotmatrix
 
 # source <(/home/sortion/.cargo/bin/starship init zsh --print-full-init)
diff --git a/liquidprompt/lp-mouse b/liquidprompt/lp-mouse
new file mode 160000
index 0000000..9cc137a
--- /dev/null
+++ b/liquidprompt/lp-mouse
@@ -0,0 +1 @@
+Subproject commit 9cc137a33be56f01a3228971cf263b530c14f9ef