feat: Add lp-mouse, and amended latexmkrc

.aliases

@@ -1,21 +1,32 @@
-alias o="evince2"
+alias o="xdg-open"
 
 alias pro="cd ~/Documents/Projects"
 alias doc="cd ~/Documents"
 alias vim="nvim"
-alias activenv="mamba activate hic2023py3.11"
+alias int="cd ~/Documents/cours/licence/L3/stage/pasteur/projects/"
+alias blog="cd ~/Documents/Projects/myself/log/"
+alias cours="cd ~/Documents/cours/master/M1/S1/"
 
-alias int="cd ~/Documents/cours/licence/L3/stage/pasteur/project/"
+# Print field name from header with the field rank 
+csv_fields() {
+  local delimiter
+  delimiter="${2:-\t}"
+  local file
+  file="${1}"
+  head -n 1 "${file}" | tr "${delimiter}" "\n" | awk '{print NR, $0}'
+}
+
+alias edit="$VISUAL"
 
 export templates_dir="~/Documents/Projects/templates"
 alias new.td='copier "$templates_dir/latex/td.template"'
 alias new.cm='copier "$templates_dir/latex/cm.template"'
 alias new.letter='copier "$templates_dir/latex/letter.template"'
-alias taquin.sync="rsync -azvu  '/home/sortion/Documents/cours/licence/L3/S6/intelligence artificielle/DM/DM2/taquin/' leon.talpa:/home/sortion/Documents/Projects/taquin/ && rsync -azvu  leon.talpa:/home/sortion/Documents/Projects/taquin/ '/home/sortion/Documents/cours/licence/L3/S6/intelligence artificielle/DM/DM2/taquin/'"
 
 pdfcompress () {
    gs -q -dNOPAUSE -dBATCH -dSAFER -sDEVICE=pdfwrite -dCompatibilityLevel=1.3 -dPDFSETTINGS=/screen -dEmbedAllFonts=true -dSubsetFonts=true -dColorImageDownsampleType=/Bicubic -dColorImageResolution=144 -dGrayImageDownsampleType=/Bicubic -dGrayImageResolution=144 -dMonoImageDownsampleType=/Bicubic -dMonoImageResolution=144 -sOutputFile="$2" "$1"; 
 }
 
-colorinvert() {                                                                 convert "$1" -channel RGB -negate "$(echo $1 | sed 's/\./-inv\./')"
+colorinvert() {
+    convert "$1" -channel RGB -negate "$(echo $1 | sed 's/\./-inv\./')"
 }

.gitmodules

@@ -0,0 +1,3 @@
+[submodule "liquidprompt/lp-mouse"]
+	path = liquidprompt/lp-mouse
+	url = git@github.com:UncleSamulus/lp-mouse.git

.latexmkrc

@@ -1,24 +1,72 @@
-# Minted
-&set_tex_cmds( '-shell-escape %O '
-        . '\'\PassOptionsToPackage{outputdir={%Y}}{minted}\input{%S}\''
-        );
+$hash_calc_ignore_pattern{aux} =
+    '^\\\\gdef\\\\minted@oldcachelist\{,'
+  . '|^\s*default\.pygstyle,'
+  . '|^\s*[[:xdigit:]]+\.pygtex';
 
-$pdflatex = 'lualatex -shell-escape -file-line-error -interaction=nonstopmode -synctex=1 -output-directory=build %O %S | texlogsieve';
-$aux_dir = 'build';
+$pdflatex =
+'lualatex -shell-escape -file-line-error -interaction=nonstopmode -synctex=1 -output-directory=build %O '
+  . '\'\PassOptionsToPackage{outputdir=build}{minted}\input{%S}\''
+  . '| texlogsieve';
+$aux_dir    = 'build';
 $bibtex_use = 2;
+
 # Amend cleaned extensions
 $clean_ext .= " fdb_latexmk run.xml synctex.gz";
+
 # Make latexmk quiet
 $latexmk_silent = 1;
 
 # Makeglossaries
-add_cus_dep('acn', 'acr', 0, 'makeglossaries');
-add_cus_dep('glo', 'gls', 0, 'makeglossaries');
+add_cus_dep( 'acn', 'acr', 0, 'makeglossaries' );
+add_cus_dep( 'glo', 'gls', 0, 'makeglossaries' );
 $clean_ext .= " acr acn alg glo gls glg";
 
 sub makeglossaries {
-    my ($base_name, $path) = fileparse( $_[0] );
+    my ( $base_name, $path ) = fileparse( $_[0] );
     my @args = ( "-q", "-d", $path, $base_name );
     if ($silent) { unshift @args, "-q"; }
-    return system "makeglossaries", "-d", $path, $base_name; 
-}
+    return system "makeglossaries", "-d", $path, $base_name;
+}
+
+sub biber {
+    my ( $base_name, $path ) = fileparse( $_[0] );
+    my @args = ( "--output-directory", $path, $base_name );
+    return system "biber", @args;
+}
+
+$silent                   = 1;    # This adds "-interaction batchmode"
+$silence_logfile_warnings = 1;
+
+END {
+    local $?;                     # do not override previous exit status
+    if ( -s "$root_filename.blg" and open my $bibfile,
+        '<', "$root_filename.blg" )
+    {
+        print("**********************\n");
+        print("bibtex/biber messages:\n");
+        while ( my $line = <$bibfile> ) {
+            if ( $line =~ /You.ve used/ ) {
+                last;
+            }
+            else {
+                print($line);
+            }
+        }
+        close($bibfile);
+    }
+    if ( -s "$root_filename.ilg" and open my $indfile,
+        '<', "$root_filename.ilg" )
+    {
+        print("*************************\n");
+        print("makeindex/xindy messages:\n");
+        while ( my $line = <$indfile> ) {
+            print($line);
+        }
+        close($indfile);
+    }
+    if ( -s "$root_filename.log" ) {
+        print("***************\n");
+        print("LaTeX messages:\n");
+        Run_subst("texlogsieve %R.log");
+    }
+}

.loadenv.sh

@@ -1,8 +1,13 @@
-export LUA_PATH='/usr/share/lua/5.4/?.lua;/usr/share/lua/5.4/?/init.lua;/usr/lib64/lua/5.4/?.lua;/usr/lib64/lua/5.4/?/init.lua;./?.lua;./?/init.lua;/home/sortion/.luarocks/share/lua/5.4/?.lua;/home/sortion/.luarocks/share/lua/5.4/?/init.lua'
-export LUA_CPATH='/usr/lib64/lua/5.4/?.so;/usr/lib64/lua/5.4/loadall.so;./?.so;/home/sortion/.luarocks/lib/lua/5.4/?.so;/usr/lib/lua/5.4/?.so'
-export PATH='/home/sortion/.luarocks/bin:/home/sortion/.julia/bin:/home/sortion/.nvm/versions/node/v17.9.1/bin:/home/sortion/.cargo/bin:/usr/local/bin:/usr/local/sbin:/usr/bin:/usr/sbin:/opt/quarto-1.3.433/bin:/home/sortion/.local/bin:/home/sortion/bin:/home/sortion/.antigen/bundles/robbyrussell/oh-my-zsh/lib:/home/sortion/.antigen/bundles/zsh-users/zsh-syntax-highlighting:/home/sortion/.antigen/bundles/robbyrussell/oh-my-zsh/plugins/git:/home/sortion/Documents/cours/tools/bin/:/usr/games/'
+export PATH="/home/$USER/.luarocks/bin:/home/$USER/.julia/bin:/home/$USER/.cargo/bin:/usr/local/bin:/usr/local/sbin:/usr/bin:/usr/sbin:/home/$USER/.local/bin:/home/$USER/bin:/home/$USER/Documents/cours/tools/bin/:/usr/games/:/home/$USER/.config/emacs/bin/:/usr/local/cuda/bin//"
 
-export EDITOR=vim
+# export EDITOR=vim
+export ALTERNATE_EDITOR=""
+export EDITOR="emacsclient -t"              # $EDITOR opens in terminal
+export VISUAL="emacsclient -fs -c -a emacs" # $VISUAL opens in GUI mode
+
+# nvm
+export NVM_DIR="$([ -z "${XDG_CONFIG_HOME-}" ] && printf %s "${HOME}/.nvm" || printf %s "${XDG_CONFIG_HOME}/nvm")"
+[ -s "$NVM_DIR/nvm.sh" ] && \. "$NVM_DIR/nvm.sh" # This loads nvm
 
 export TEXMFHOME=~/.texmf
 
@@ -15,19 +20,19 @@ eval $(thefuck --alias)
 
 # >>> conda initialize >>>
 # !! Contents within this block are managed by 'conda init' !!
-__conda_setup="$('/home/sortion/.local/share/mambaforge/bin/conda' 'shell.zsh' 'hook' 2>/dev/null)"
+__conda_setup="$('/home/$USER/.local/share/mambaforge/bin/conda' 'shell.zsh' 'hook' 2>/dev/null)"
 if [ $? -eq 0 ]; then
 	eval "$__conda_setup"
 else
-	if [ -f "/home/sortion/.local/share/mambaforge/etc/profile.d/conda.sh" ]; then
-		. "/home/sortion/.local/share/mambaforge/etc/profile.d/conda.sh"
+	if [ -f "/home/$USER/.local/share/mambaforge/etc/profile.d/conda.sh" ]; then
+		. "/home/$USER/.local/share/mambaforge/etc/profile.d/conda.sh"
 	else
-		export PATH="/home/sortion/.local/share/mambaforge/bin:$PATH"
+		export PATH="/home/$USER/.local/share/mambaforge/bin:$PATH"
 	fi
 fi
 unset __conda_setup
 
-if [ -f "/home/sortion/.local/share/mambaforge/etc/profile.d/mamba.sh" ]; then
-	. "/home/sortion/.local/share/mambaforge/etc/profile.d/mamba.sh"
+if [ -f "/home/$USER/.local/share/mambaforge/etc/profile.d/mamba.sh" ]; then
+	. "/home/$USER/.local/share/mambaforge/etc/profile.d/mamba.sh"
 fi
 # <<< conda initialize <<<

.zshrc

@@ -1,9 +1,9 @@
 autoload antigen
 
-source ~/.aliases
-
 source ~/.loadenv.sh
 
+source ~/.aliases
+
 source ~/.dotfiles/antigen/antigen.zsh
 
 antigen use oh-my-zsh
@@ -34,8 +34,12 @@ source ~/.antigen/bundles/nojhan/liquidprompt/liquidprompt
 
 # source ~/.antigen/bundles/nojhan/liquidprompt/themes/powerline/powerline.theme && lp_theme powerline
 
+source ~/.dotfiles/liquidprompt/lp-mouse/preset.conf
+
 source ~/.antigen/bundles/nojhan/lp-dotmatrix/presets/variant-chevron.conf
 
+source  ~/.antigen/bundles/nojhan/lp-dotmatrix/presets/colors_green-red.conf 
+
 source ~/.antigen/bundles/nojhan/lp-dotmatrix/dotmatrix.theme && lp_theme dotmatrix
 
 # source <(/home/sortion/.cargo/bin/starship init zsh --print-full-init)

Makefile

@@ -3,9 +3,9 @@ all: pull install
 pull: 
 	git pull
 
-install: antigen source fish
+install: antigen source emacs nvim
 
-source: fishcfg
+source: fish 
 	cp ~/.dotfiles/.aliases ~/.aliases
 	cp ~/.dotfiles/.zshrc ~/.zshrc
 	cp ~/.dotfiles/.loadenv.sh ~/.loadenv.sh
@@ -13,13 +13,18 @@ source: fishcfg
 	cp ~/.dotfiles/.gitconfig ~/.gitconfig
 	cp ~/.dotfiles/.latexmkrc ~/.latexmkrc
 
-fishcfg:
+
+fish:
 	mkdir -p ~/.config/fish
 	cp ./.config/fish/config.fish ~/.config/fish/config.fish
 	cp ./.aliases.fish ~/.aliases.fish
 	cp ./.config/starship.toml ~/.config/starship.toml
 
 nvim:	
+	git clone ssh://gitea@forge.chapril.org:222/sortion/nvim.conf ~/.config/nvim/
+
+emacs:
+	git clone ssh://gitea@forge.chapril.org:222/sortion/.emacs.d.git ~/.emacs.d/
 
 antigen:
 	git clone https://github.com/zsh-users/antigen.git

liquidprompt/lp-mouse

@@ -0,0 +1 @@
+Subproject commit 9cc137a33be56f01a3228971cf263b530c14f9ef