Add today/by date or taxon_id stats and record access
This commit is contained in:
parent
e4488e1918
commit
128e3f33bb
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@ -24,7 +24,7 @@ header img#logo {
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}
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main {
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min-height: 80vh;
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min-height: 100vh;
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padding: 5em;
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}
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@ -51,14 +51,14 @@ nav ul {
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justify-content: space-between;
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align-items: center;
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background-color: lightgreen;
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margin: 0;
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padding: 0;
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background-color: #333;
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margin: auto;
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min-width: 100vw;
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}
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nav ul li a,
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.dropdown-button {
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color: green;
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color: white;
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text-decoration: none;
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display: block;
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padding: 1em 0.5em;
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@ -66,7 +66,13 @@ nav ul li a,
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nav ul li a.active,
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nav ul li a:hover {
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background-color: aquamarine;
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background-color: #999;
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color: #101010
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}
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.dropdown-button:hover {
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background-color: #900;
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color: white
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}
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.dropdown:hover .dropdown-content {
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@ -76,7 +82,6 @@ nav ul li a:hover {
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.dropdown-content {
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display: none;
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position: absolute;
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background-color: #f9f9f9;
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min-width: 160px;
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box-shadow: 0px 8px 16px 0px rgba(0, 0, 0, 0.2);
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z-index: 1;
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@ -86,4 +91,8 @@ canvas {
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display: block;
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height: 100%;
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width: 100%;
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}
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.scientific-name {
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font-style: italic;
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}
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@ -7,17 +7,22 @@
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"php": ">=8.1",
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"ext-ctype": "*",
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"ext-iconv": "*",
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"doctrine/doctrine-bundle": "^2.7",
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"doctrine/doctrine-migrations-bundle": "^3.2",
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"doctrine/orm": "^2.13",
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"sensio/framework-extra-bundle": "^6.2",
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"symfony/console": "6.1.*",
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"symfony/dotenv": "6.1.*",
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"symfony/flex": "^2",
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"symfony/framework-bundle": "6.1.*",
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"symfony/proxy-manager-bridge": "6.1.*",
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"symfony/runtime": "6.1.*",
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"symfony/translation": "6.1.*",
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"symfony/twig-bundle": "6.1.*",
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"symfony/webpack-encore-bundle": "^1.15",
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"symfony/yaml": "6.1.*",
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"twig/extra-bundle": "^2.12|^3.0",
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"twig/intl-extra": "^3.4",
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"twig/twig": "^2.12|^3.0"
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},
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"config": {
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@ -71,5 +76,8 @@
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"allow-contrib": false,
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"require": "6.1.*"
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}
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},
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"require-dev": {
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"symfony/maker-bundle": "^1.45"
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}
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}
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File diff suppressed because it is too large
Load Diff
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@ -6,4 +6,7 @@ return [
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Symfony\Bundle\TwigBundle\TwigBundle::class => ['all' => true],
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Twig\Extra\TwigExtraBundle\TwigExtraBundle::class => ['all' => true],
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Symfony\WebpackEncoreBundle\WebpackEncoreBundle::class => ['all' => true],
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Symfony\Bundle\MakerBundle\MakerBundle::class => ['dev' => true],
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Doctrine\Bundle\DoctrineBundle\DoctrineBundle::class => ['all' => true],
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Doctrine\Bundle\MigrationsBundle\DoctrineMigrationsBundle::class => ['all' => true],
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];
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@ -0,0 +1,42 @@
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doctrine:
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dbal:
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url: '%env(resolve:DATABASE_URL)%'
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# IMPORTANT: You MUST configure your server version,
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# either here or in the DATABASE_URL env var (see .env file)
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#server_version: '13'
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orm:
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auto_generate_proxy_classes: true
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naming_strategy: doctrine.orm.naming_strategy.underscore_number_aware
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auto_mapping: true
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mappings:
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App:
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is_bundle: false
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dir: '%kernel.project_dir%/src/Entity'
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prefix: 'App\Entity'
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alias: App
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when@test:
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doctrine:
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dbal:
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# "TEST_TOKEN" is typically set by ParaTest
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dbname_suffix: '_test%env(default::TEST_TOKEN)%'
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when@prod:
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doctrine:
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orm:
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auto_generate_proxy_classes: false
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query_cache_driver:
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type: pool
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pool: doctrine.system_cache_pool
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result_cache_driver:
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type: pool
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pool: doctrine.result_cache_pool
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framework:
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cache:
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pools:
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doctrine.result_cache_pool:
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adapter: cache.app
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doctrine.system_cache_pool:
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adapter: cache.system
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@ -0,0 +1,6 @@
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doctrine_migrations:
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migrations_paths:
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# namespace is arbitrary but should be different from App\Migrations
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# as migrations classes should NOT be autoloaded
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'DoctrineMigrations': '%kernel.project_dir%/migrations'
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enable_profiler: '%kernel.debug%'
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@ -0,0 +1,8 @@
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version: '3'
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services:
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###> doctrine/doctrine-bundle ###
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database:
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ports:
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- "5432"
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###< doctrine/doctrine-bundle ###
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@ -0,0 +1,21 @@
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version: '3'
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services:
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###> doctrine/doctrine-bundle ###
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database:
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image: postgres:${POSTGRES_VERSION:-14}-alpine
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environment:
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POSTGRES_DB: ${POSTGRES_DB:-app}
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# You should definitely change the password in production
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POSTGRES_PASSWORD: ${POSTGRES_PASSWORD:-!ChangeMe!}
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POSTGRES_USER: ${POSTGRES_USER:-app}
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volumes:
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- db-data:/var/lib/postgresql/data:rw
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# You may use a bind-mounted host directory instead, so that it is harder to accidentally remove the volume and lose all your data!
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# - ./docker/db/data:/var/lib/postgresql/data:rw
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###< doctrine/doctrine-bundle ###
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volumes:
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###> doctrine/doctrine-bundle ###
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db-data:
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###< doctrine/doctrine-bundle ###
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@ -0,0 +1,146 @@
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<?php
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// src/Controller/TodayController.php
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namespace App\Controller;
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use Symfony\Component\HttpFoundation\Response;
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use Symfony\Component\HttpFoundation\Request;
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use Symfony\Component\Routing\Annotation\Route;
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use Symfony\Bundle\FrameworkBundle\Controller\AbstractController;
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use Doctrine\DBAL\Connection;
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class TodayController extends AbstractController
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{
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private Connection $connection;
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/**
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* @Route("/today", name="today")
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*/
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public function today(Connection $connection)
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{
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$this->connection = $connection;
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$date = date('Y-m-d');
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return $this->render('today/index.html.twig', [
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"species" => $this->recorded_species_by_date($date),
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]);
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}
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/**
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* @Route("/today/species", name="today_species")
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*/
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public function today_species_page(Connection $connection)
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{
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$this->connection = $connection;
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$date = date('Y-m-d');
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return $this->render('today/index.html.twig', [
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"species" => $this->recorded_species_by_date($date)
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]);
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}
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/**
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* @Route("/today/species/{id}", name="today_species_id")
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*/
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public function today_species_by_id(Connection $connection, $id)
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{
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$this->connection = $connection;
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$date = date('Y-m-d');
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return $this->render('today/species.html.twig', [
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"results" => $this->recorded_species_by_id_and_date($id, $date)
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]);
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}
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/**
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* @Route("/today/{date}", name="today_date")
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*/
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public function today_date(Connection $connection, $date)
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{
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return $this->redirectToRoute('today_species_date', array('date' => $date));
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}
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/**
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* @Route("/today/{date}/species", name="today_species_date")
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*/
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public function today_species_by_date(Connection $connection, $date)
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{
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$this->connection = $connection;
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return $this->render('today/index.html.twig', [
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"date" => $date,
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"results" => $this->recorded_species_by_date($date)
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]);
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}
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/**
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* @Route("/today/{date}/species/{id}", name="today_species_id_and_date")
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*/
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public function today_species_by_id_and_date(Connection $connection, $date, $id)
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{
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$this->connection = $connection;
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return $this->render('today/species.html.twig', [
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"date" => $date,
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"results" => $this->recorded_species_by_id_and_date($id, $date)
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]);
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}
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private function recorded_species_by_date($date)
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{
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$sql = "SELECT `taxon`.`taxon_id`, `scientific_name`, `common_name`, COUNT(*) AS `contact_count`, MAX(`confidence`) AS max_confidence
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FROM observation
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INNER JOIN taxon
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ON observation.taxon_id = taxon.taxon_id
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WHERE strftime('%Y-%m-%d', `observation`.`date`) =:date
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GROUP BY observation.taxon_id";
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$stmt = $this->connection->prepare($sql);
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$stmt->bindValue(':date', $date);
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$result = $stmt->executeQuery();
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return $result->fetchAllAssociative();
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}
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private function recorded_species_by_id_and_date($id, $date)
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{
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/* Get taxon even if there is no record this date */
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$sql = "SELECT * FROM `taxon` WHERE `taxon_id` = :id";
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$stmt = $this->connection->prepare($sql);
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$stmt->bindValue(':id', $id);
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$result = $stmt->executeQuery();
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$taxon = $result->fetchAssociative();
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if (!$taxon) {
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return [];
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}
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/* Get daily stats */
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$sql = "SELECT COUNT(*) AS `contact_count`, MAX(`confidence`) AS `max_confidence`
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FROM `taxon`
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INNER JOIN `observation`
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ON `taxon`.`taxon_id` = `observation`.`taxon_id`
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WHERE strftime('%Y-%m-%d', `observation`.`date`) = :date
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AND `observation`.`taxon_id` = :id";
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$stmt = $this->connection->prepare($sql);
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$stmt->bindValue(':id', $id);
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$stmt->bindValue(':date', $date);
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$result = $stmt->executeQuery();
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$stat = $result->fetchAllAssociative();
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$sql = "SELECT * FROM `observation`
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WHERE `taxon_id` = :id
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AND strftime('%Y-%m-%d', `observation`.`date`) = :date";
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$stmt = $this->connection->prepare($sql);
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$stmt->bindValue(':id', $id);
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$stmt->bindValue(':date', $date);
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$result = $stmt->executeQuery();
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$records = $result->fetchAllAssociative();
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return array("taxon" => $taxon, "stat" => $stat, "records" => $records);
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}
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private function best_confidence_today($id, $date)
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{
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$sql = "SELECT MAX(`confidence`) AS confidence
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FROM `observation`
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WHERE strftime('%Y-%m-%d', `observation`.`date`) = :date
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AND `taxon_id` = :id";
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$stmt = $this->connection->prepare($sql);
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$stmt->bindValue(':id', $id);
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$stmt->bindValue(':date', $date);
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$result = $stmt->executeQuery();
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return $result->fetchAllAssociative();
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}
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}
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@ -8,6 +8,33 @@
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"ref": "64d8583af5ea57b7afa4aba4b159907f3a148b05"
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}
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},
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"doctrine/doctrine-bundle": {
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"version": "2.7",
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"recipe": {
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"repo": "github.com/symfony/recipes",
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"branch": "main",
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"version": "2.4",
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"ref": "da713d006953b90d1c085c1be480ecdd6c4a95e0"
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},
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"files": [
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"config/packages/doctrine.yaml",
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"src/Entity/.gitignore",
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"src/Repository/.gitignore"
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]
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},
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"doctrine/doctrine-migrations-bundle": {
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"version": "3.2",
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"recipe": {
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"repo": "github.com/symfony/recipes",
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"branch": "main",
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"version": "3.1",
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"ref": "ee609429c9ee23e22d6fa5728211768f51ed2818"
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},
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"files": [
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"config/packages/doctrine_migrations.yaml",
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"migrations/.gitignore"
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]
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},
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"sensio/framework-extra-bundle": {
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"version": "6.2",
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"recipe": {
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@ -63,6 +90,15 @@
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"src/Kernel.php"
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]
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},
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"symfony/maker-bundle": {
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"version": "1.45",
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"recipe": {
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"repo": "github.com/symfony/recipes",
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"branch": "main",
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"version": "1.0",
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"ref": "fadbfe33303a76e25cb63401050439aa9b1a9c7f"
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}
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},
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"symfony/routing": {
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"version": "6.1",
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"recipe": {
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@ -0,0 +1,17 @@
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{% extends "base.html.twig" %}
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{% block content %}
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<h2>{{ "Today's Detected Species" | trans }}</h2>
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{# Display a list of records if any, else, print message #}
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{% if results[0] is defined and results[0] | length > 0 %}
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<ul>
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{% for sp in results %}
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<li class="species">
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<a href="./species/{{ sp['taxon_id'] }}">
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<span class="scientific-name">{{ sp["scientific_name"] }} (</span><span class="common-name">{{ sp["common_name"] }}</span>)
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</a>
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</li>
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{% endfor %}
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</ul>
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{% endif %}
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{% endblock %}
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@ -0,0 +1,72 @@
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{% extends "base.html.twig" %}
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{% block content %}
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{% if results is defined and results | length > 0 %}
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{% set taxon = results["taxon"] %}
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<h2>
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{% set today = "now" | date("Y-m-d") %}
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{% if today == date %}
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{{ "Today's contact for" | trans }}
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{% else %}
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{{ "Contact on " | trans }}
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{{ date | format_datetime("full", "none") }}
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{{ " for " | trans }}
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{% endif %}
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<span class="scientific-name">
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{{ taxon["scientific_name"] }}
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</span>
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(<span class="common-name">
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{{ taxon["common_name"] }}
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</span>)
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</h2>
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<div class="stats">
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{% set stat = results["stat"][0] %}
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<h3>{{ "Stats" | trans }}</h3>
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<div class="contact-count">
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{{ "Contact count:" | trans }}
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<span class="counter">{{ stat["contact_count"] }}</span>
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</div>
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<div class="contact-confidence">
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{{ "Max confidence" | trans }}
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<span class="value">{{ stat["max_confidence"] }}</span>
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</div>
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</div>
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{% set records = results["records"] %}
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<div class="records">
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<h3>{{ "Contact records" | trans }}</h3>
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{% if records is defined and records | length > 0 %}
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<table>
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<thead>
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<tr>
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<th>{{ "Filename" | trans }}</th>
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<th>{{ "Time" | trans }}</th>
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<th>{{ "Confidence" | trans }}</th>
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<th>{{ "Audio" | trans }}</th>
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</thead>
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<tbody>
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{% for record in records %}
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<tr>
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<td>
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<a title="{{ "Download audio file" | trans }}" href="/media/records/{{ record['audio_file'] }}">
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{{ record["audio_file"] }}
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</a>
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</td>
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<td>{{ record["date"] | date("H:m") }}</td>
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<td>{{ record["confidence"] }}</td>
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<td>
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<audio controls>
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<source src="/media/records/{{ record['audio_file'] }}" type="audio/wav">
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Your browser does not support the audio element.
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</audio>
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</td>
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</tr>
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{% endfor %}
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</tbody>
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</table>
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{% else %}
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<p>{{ "No records this day for this species" | trans }}</p>
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{% endif %}
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</div>
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{% endif %}
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{% endblock %}
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