From cb405a8c781430471b294f902c1b00ec53b6748a Mon Sep 17 00:00:00 2001
From: Samuel ORTION <samuel.ortion@orange.fr>
Date: Sun, 18 Sep 2022 07:55:20 +0200
Subject: [PATCH] Added first doctrine class: MedicineSpeciality

---
 api/.github/CONTRIBUTING.md                   | 102 -----------------
 api/.github/workflows/ci.yml                  |  48 --------
 api/README.md                                 |  55 ++-------
 api/api/public/apple-touch-icon.png           | Bin 9236 -> 0 bytes
 api/api/public/favicon.ico                    | Bin 32038 -> 0 bytes
 api/api/src/Entity/Greeting.php               |  35 ------
 .../src/Entity/MedicineAdministrationWay.php  |  44 +++++++
 api/api/src/Entity/MedicineHolder.php         |  41 +++++++
 api/api/src/Entity/MedicineSpeciality.php     | 107 ++++++++++++++++++
 9 files changed, 202 insertions(+), 230 deletions(-)
 delete mode 100755 api/.github/CONTRIBUTING.md
 delete mode 100644 api/.github/workflows/ci.yml
 delete mode 100644 api/api/public/apple-touch-icon.png
 delete mode 100644 api/api/public/favicon.ico
 delete mode 100644 api/api/src/Entity/Greeting.php
 create mode 100644 api/api/src/Entity/MedicineAdministrationWay.php
 create mode 100644 api/api/src/Entity/MedicineHolder.php
 create mode 100644 api/api/src/Entity/MedicineSpeciality.php

diff --git a/api/.github/CONTRIBUTING.md b/api/.github/CONTRIBUTING.md
deleted file mode 100755
index e72b180..0000000
--- a/api/.github/CONTRIBUTING.md
+++ /dev/null
@@ -1,102 +0,0 @@
-# Contributing to API Platform
-
-First, thank you for contributing, you're awesome!
-
-To have your code integrated in the API Platform project, there are some rules to follow, but don't panic, it's easy!
-
-## Reporting Bugs
-
-If you happen to find a bug, we kindly request you to report it. However, before submitting it, please:
-
-  * Check the [project documentation available online](https://api-platform.com/docs/)
-
-Then, if it appears that it's a real bug, you may report it using Github by following these 3 points:
-
-  * Check if the bug is not already reported!
-  * A clear title to resume the issue
-  * A description of the workflow needed to reproduce the bug,
-
-> _NOTE:_ Don’t hesitate to give as much information as you can (OS, PHP version extensions...)
-
-## Pull Requests
-
-### Writing a Pull Request
-
-You should base your changes on the `main` branch.
-
-### Matching Coding Standards
-
-The API Platform project follows [Symfony coding standards](https://symfony.com/doc/current/contributing/code/standards.html).
-But don't worry, you can fix CS issues automatically using the [PHP CS Fixer](http://cs.sensiolabs.org/) tool:
-
-```bash
-php-cs-fixer.phar fix
-```
-
-And then, add fixed file to your commit before push.
-Be sure to add only **your modified files**. If another files are fixed by cs tools, just revert it before commit.
-
-### Sending a Pull Request
-
-When you send a PR, just make sure that:
-
-* You add valid test cases.
-* Tests are green.
-* You make a PR on the related documentation in the [api-platform/docs](https://github.com/api-platform/docs) repository.
-* You make the PR on the same branch you based your changes on. If you see commits
-  that you did not make in your PR, you're doing it wrong.
-* Also don't forget to add a comment when you update a PR with a ping to [the maintainers](https://github.com/orgs/api-platform/people),
-  so he/she will get a notification.
-* Squash your commits into one commit. (see the next chapter)
-
-Fill in the following header from the pull request template:
-
-```markdown
-| Q             | A
-| ------------- | ---
-| Bug fix?      | yes/no
-| New feature?  | yes/no
-| BC breaks?    | no
-| Deprecations? | no
-| Tests pass?   | yes
-| Fixed tickets | #1234, #5678
-| License       | MIT
-| Doc PR        | api-platform/docs#1234
-```
-
-## Squash your Commits
-
-If you have 3 commits. So start with:
-
-```bash
-git rebase -i HEAD~3
-```
-
-An editor will be opened with your 3 commits, all prefixed by `pick`.
-
-Replace all `pick` prefixes by `fixup` (or `f`) **except the first commit** of the list.
-
-Save and quit the editor.
-
-After that, all your commits where squashed into the first one and the commit message of the first commit.
-
-If you would like to rename your commit message type:
-
-```bash
-git commit --amend
-```
-
-Now force push to update your PR:
-
-```bash
-git push --force
-```
-
-# License and Copyright Attribution
-
-When you open a Pull Request to the API Platform project, you agree to license your code under the [MIT license](../LICENSE)
-and to transfer the copyright on the submitted code to [Kévin Dunglas](https://github.com/dunglas).
-
-Be sure to you have the right to do that (if you are a professional, ask your company)!
-
-If you include code from another project, please mention it in the Pull Request description and credit the original author.
diff --git a/api/.github/workflows/ci.yml b/api/.github/workflows/ci.yml
deleted file mode 100644
index 637a479..0000000
--- a/api/.github/workflows/ci.yml
+++ /dev/null
@@ -1,48 +0,0 @@
-name: CI
-
-on:
-  push:
-    branches:
-      - main
-  pull_request: ~
-  workflow_dispatch: ~
-
-jobs:
-  tests:
-    name: Tests
-    runs-on: ubuntu-latest
-    steps:
-      - name: Checkout
-        uses: actions/checkout@v2
-      - name: Pull images
-        run: docker compose pull --ignore-pull-failures || true
-      - name: Start services
-        run: docker compose up --build -d
-      - name: Wait for services
-        run: |
-          while status="$(docker inspect --format="{{if .Config.Healthcheck}}{{print .State.Health.Status}}{{end}}" "$(docker compose ps -q php)")"; do
-            case $status in
-              starting) sleep 1;;
-              healthy) exit 0;;
-              unhealthy)
-                docker compose ps
-                docker compose logs
-                exit 1
-              ;;
-            esac
-          done
-          exit 1
-      - name: Check HTTP reachability
-        run: curl -v -o /dev/null http://localhost
-      - name: Check API reachability
-        run: curl -vk -o /dev/null https://localhost
-      - name: Check PWA reachability
-        run: "curl -vk -o /dev/null -H 'Accept: text/html' https://localhost"
-      - name: Create test database
-        run: |
-          docker compose exec -T php bin/console -e test doctrine:database:create
-          docker compose exec -T php bin/console -e test doctrine:migrations:migrate --no-interaction
-      - name: PHPUnit
-        run: docker compose exec -T php bin/phpunit
-      - name: Doctrine Schema Validator
-        run: docker compose exec -T php bin/console doctrine:schema:validate --skip-sync
diff --git a/api/README.md b/api/README.md
index d57be8f..e70cca6 100644
--- a/api/README.md
+++ b/api/README.md
@@ -1,50 +1,15 @@
-<h1 align="center"><a href="https://api-platform.com"><img src="https://api-platform.com/logo-250x250.png" alt="API Platform"></a></h1>
+# API
 
-API Platform is a next-generation web framework designed to easily create API-first projects without compromising extensibility
-and flexibility:
+## Setup
 
-* Design your own data model as plain old PHP classes or [**import an existing ontology**](https://api-platform.com/docs/schema-generator).
-* **Expose in minutes a hypermedia REST or a GraphQL API** with pagination, data validation, access control, relation embedding,
-  filters and error handling...
-* Benefit from Content Negotiation: [GraphQL](https://api-platform.com/docs/core/graphql/), [JSON-LD](https://json-ld.org), [Hydra](https://hydra-cg.com),
-  [HAL](https://github.com/mikekelly/hal_specification/blob/master/hal_specification.md), [JSON:API](https://jsonapi.org/), [YAML](https://yaml.org/), [JSON](https://www.json.org/), [XML](https://www.w3.org/XML/) and [CSV](https://www.ietf.org/rfc/rfc4180.txt) are supported out of the box.
-* Enjoy the **beautiful automatically generated API documentation** ([OpenAPI](https://api-platform.com/docs/core/openapi/)).
-* Add [**a convenient Material Design administration interface**](https://api-platform.com/docs/admin) built with [React](https://reactjs.org/)
-  without writing a line of code.
-* **Scaffold fully functional Progressive-Web-Apps and mobile apps** built with [Next.js](https://api-platform.com/docs/client-generator/nextjs/) (React),
-[Nuxt.js](https://api-platform.com/docs/client-generator/nuxtjs/) (Vue.js) or [React Native](https://api-platform.com/docs/client-generator/react-native/)
-thanks to [the client generator](https://api-platform.com/docs/client-generator/) (a Vue.js generator is also available).
-* Install a development environment and deploy your project in production using **[Docker](https://api-platform.com/docs/distribution)**
-and [Kubernetes](https://api-platform.com/docs/deployment/kubernetes).
-* Easily add **[OAuth](https://oauth.net/) authentication**.
-* Create specs and tests with **[a developer friendly API testing tool](https://api-platform.com/docs/distribution/testing/)**.
+### Requirements
 
-[![GitHub Actions](https://github.com/api-platform/core/workflows/CI/badge.svg)](https://github.com/api-platform/core/actions?workflow=CI)
-[![Codecov](https://codecov.io/gh/api-platform/core/branch/master/graph/badge.svg)](https://codecov.io/gh/api-platform/core/branch/master)
+- docker
+- docker-compose
 
-The official project documentation is available **[on the API Platform website](https://api-platform.com)**.
+### Installation
 
-API Platform embraces open web standards and the
-[Linked Data](https://www.w3.org/standards/semanticweb/data) movement. Your API will automatically expose structured data.
-It means that your API Platform application is usable **out of the box** with technologies of
-the semantic web.
-
-It also means that **your SEO will be improved** because **[Google leverages these formats](https://developers.google.com/search/docs/guides/intro-structured-data)**.
-
-Last but not least, the server component of API Platform is built on top of the [Symfony](https://symfony.com) framework,
-while client components leverage [React](https://reactjs.org/) ([Vue.js](https://vuejs.org/) flavors are also available).
-It means that you can:
-
-* Use **thousands of Symfony bundles and React components** with API Platform.
-* Integrate API Platform in **any existing Symfony, React or Vue application**.
-* Reuse **all your Symfony and JavaScript skills**, benefit of the incredible amount of documentation available.
-* Enjoy the popular [Doctrine ORM](https://www.doctrine-project.org/projects/orm.html) (used by default, but fully optional:
-  you can use the data provider you want, including but not limited to MongoDB and Elasticsearch)
-
-## Install
-
-[Read the official "Getting Started" guide](https://api-platform.com/docs/distribution).
-
-## Credits
-
-Created by [Kévin Dunglas](https://dunglas.fr). Commercial support available at [Les-Tilleuls.coop](https://les-tilleuls.coop).
+```bash
+docker-compose build
+docker-compose up -d
+```
diff --git a/api/api/public/apple-touch-icon.png b/api/api/public/apple-touch-icon.png
deleted file mode 100644
index ff0eafb36110ed1d21b2971b15cdcfac7214fcd8..0000000000000000000000000000000000000000
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diff --git a/api/api/src/Entity/Greeting.php b/api/api/src/Entity/Greeting.php
deleted file mode 100644
index 93c831a..0000000
--- a/api/api/src/Entity/Greeting.php
+++ /dev/null
@@ -1,35 +0,0 @@
-<?php
-
-namespace App\Entity;
-
-use ApiPlatform\Metadata\ApiResource;
-use Doctrine\ORM\Mapping as ORM;
-use Symfony\Component\Validator\Constraints as Assert;
-
-/**
- * This is a dummy entity. Remove it!
- */
-#[ApiResource(mercure: true)]
-#[ORM\Entity]
-class Greeting
-{
-    /**
-     * The entity ID
-     */
-    #[ORM\Id]
-    #[ORM\Column(type: 'integer')]
-    #[ORM\GeneratedValue]
-    private ?int $id = null;
-
-    /**
-     * A nice person
-     */
-    #[ORM\Column]
-    #[Assert\NotBlank]
-    public string $name = '';
-
-    public function getId(): ?int
-    {
-        return $this->id;
-    }
-}
diff --git a/api/api/src/Entity/MedicineAdministrationWay.php b/api/api/src/Entity/MedicineAdministrationWay.php
new file mode 100644
index 0000000..bff445d
--- /dev/null
+++ b/api/api/src/Entity/MedicineAdministrationWay.php
@@ -0,0 +1,44 @@
+<?php
+
+use ApiPlatform\Metadata\ApiResource;
+use Doctrine\Common\Collections\ArrayCollection;
+use Doctrine\ORM\Mapping as ORM;
+
+/**
+ * A medicine administration way.
+ * i.e. "comprime secable voie orale" for instance
+ */
+#[ORM\Entity]
+#[ApiResource]
+class MedicineAdministrationWay
+{
+    #[ORM\Id, ORM\Column,ORM\GeneratedValue]
+    private ?int $id = null;
+
+    /**
+     * This CIS (Code Identifiant de Spécialité) id is the unique identifier of the medicine.
+     */
+    #[ORM\Column]
+    private ?string $CIS = null;
+
+    /**
+     * The drug administration way
+     */
+    #[ORM\Column]
+    private ?string $administration_way = null;
+
+    public function getId(): ?int
+    {
+        return $this->id;
+    }
+
+    public function getCIS(): ?string
+    {
+        return $this->CIS;
+    }
+
+    public function getAdministrationWay(): ?string
+    {
+        return $this->administration_way;
+    }
+}
diff --git a/api/api/src/Entity/MedicineHolder.php b/api/api/src/Entity/MedicineHolder.php
new file mode 100644
index 0000000..31e3310
--- /dev/null
+++ b/api/api/src/Entity/MedicineHolder.php
@@ -0,0 +1,41 @@
+<?php
+
+use ApiPlatform\Metadata\ApiResource;
+use Doctrine\ORM\Mapping as ORM;
+
+/**
+ * A medicine holder (titulaire of an AMM).
+ */
+#[ORM\Entity]
+#[ApiResource]
+class MedicineHolder
+{
+    #[ORM\Id]
+    #[ORM\GeneratedValue]
+    #[ORM\Column(type: 'integer')]
+    private ?int $id = null;
+
+    /**
+     * This CIS (Code Identifiant de Spécialité) id is the unique identifier of the medicine.
+     */
+    #[ORM\Column(type: 'string', length: 11)]
+    private ?string $CIS = null;
+
+    #[ORM\Column]
+    private string $name = '';
+
+    public function getId(): ?int
+    {
+        return $this->id;
+    }
+
+    public function getCIS(): ?string
+    {
+        return $this->CIS;
+    }
+
+    public function getName(): ?string
+    {
+        return $this->name;
+    }
+}
diff --git a/api/api/src/Entity/MedicineSpeciality.php b/api/api/src/Entity/MedicineSpeciality.php
new file mode 100644
index 0000000..6824599
--- /dev/null
+++ b/api/api/src/Entity/MedicineSpeciality.php
@@ -0,0 +1,107 @@
+<?php
+
+use ApiPlatform\Metadata\ApiResource;
+use Doctrine\Common\Collections\ArrayCollection;
+use Doctrine\ORM\Mapping as ORM;
+
+/**
+ * A medicine speciality.
+ *
+ * Medicine that is in the commercial distribution or that has been in commercial distribution since less than three years.
+ *
+ * From CIS_bdpm.txt
+ * @see https://base-donnees-publique.medicaments.gouv.fr/telechargement.php
+ */
+#[ORM\Entity]
+#[ApiResource]
+class MedicineSpeciality
+{
+
+    /**
+     * This CIS (Code Identifiant de Spécialité) id is the unique identifier of the medicine.
+     */
+    #[ORM\Id, ORM\Column]
+    private ?int $CIS = null;
+
+    /**
+     * Name of the medicine.
+     */
+    #[ORM\Column]
+    private ?string $denomination = null;
+
+    /**
+     * Pharmaceutical form of the medicine.
+     *
+     *
+     */
+    #[ORM\Column]
+    private ?string $form = null;
+
+    /**
+     * Ways of drug administration of the medicine.
+     * @var medicineAdministrationWay[] Available administration routes for this medicine.
+     */
+    #[ORM\OneToMany(mappedBy: 'medicine', targetEntity: MedicineAdministrationWay::class)]
+    public iterable $ways;
+
+    /**
+     * Administrative state of medicine's market authorization (AMM).
+     */
+    #[ORM\Column]
+    private ?string $market_auth_status = null;
+
+    /**
+     * Type of medicine market authorization process
+     */
+    #[ORM\Column]
+    private ?string $market_auth_process_type = null;
+
+    /**
+     * Date of medicine market authorization (AMM - * Autorisation de Mise sur le Marché)
+     */
+    #[ORM\Column(type: 'date')]
+    private ?\DateTimeInterface $market_auth_date = null;
+
+    /**
+     * Market status
+     *
+     * State of medicine commercialization.
+     */
+    #[ORM\Column]
+    private ?string $market_status = null;
+
+    /**
+     * Bdm status
+     *
+     * either "alerte", "warning disponibilité"
+     */
+    #[ORM\Column]
+    private ?string $bdm_status = null;
+
+    /**
+     * European authorization code
+     */
+    #[ORM\Column]
+    private ?int $european_auth_code = null;
+
+    /**
+     * Holders(s)
+     *
+     * @var MedicineHolder[] Holders of the medicine market authorization (AMM)
+     */
+    #[ORM\OneToMany]
+    public iterable $holders;
+
+    /**
+     * Enforced surveillance
+     *
+     * either 'Oui' or 'Non'
+     */
+    #[ORM\Column]
+    private ?string $enforced_surveillance = null;
+
+    // public function __construct()
+    // {
+
+    // }
+}