Merge branch 'dev' of ssh://forge.chapril.org:222/P4PILLON/caterpillar into dev

README.md

@@ -1,3 +1,3 @@
-# catterpillar
+# caterpillar
 
 Web Application to get medicines information from barcode using open data

TODO

@@ -0,0 +1,2 @@
+- Create data bulk SQL import 
+- Create all mecine doctrine entities

api/.editorconfig

@@ -0,0 +1,76 @@
+# EditorConfig helps developers define and maintain consistent
+# coding styles between different editors and IDEs
+# editorconfig.org
+
+root = true
+
+[*]
+# Change these settings to your own preference
+indent_style = space
+indent_size = 4
+
+# We recommend you to keep these unchanged
+end_of_line = lf
+charset = utf-8
+trim_trailing_whitespace = true
+insert_final_newline = true
+
+[*.{js,html,ts,tsx}]
+indent_style = space
+indent_size = 2
+
+[*.json]
+indent_style = space
+indent_size = 2
+
+[*.md]
+trim_trailing_whitespace = false
+
+[*.php]
+indent_style = space
+indent_size = 4
+
+[*.sh]
+indent_style = tab
+indent_size = 4
+
+[*.xml{,.dist}]
+indent_style = space
+indent_size = 4
+
+[*.{yaml,yml}]
+indent_style = space
+indent_size = 4
+trim_trailing_whitespace = false
+
+[helm/api-platform/**.yaml]
+indent_style = space
+indent_size = 2
+
+[.github/workflows/*.yml]
+indent_style = space
+indent_size = 2
+
+[.gitmodules]
+indent_style = tab
+indent_size = 4
+
+[.php_cs{,.dist}]
+indent_style = space
+indent_size = 4
+
+[.travis.yml]
+indent_style = space
+indent_size = 2
+
+[composer.json]
+indent_style = space
+indent_size = 4
+
+[docker-compose{,.*}.{yaml,yml}]
+indent_style = space
+indent_size = 2
+
+[Dockerfile]
+indent_style = tab
+indent_size = 4

api/.gitattributes

@@ -0,0 +1,19 @@
+* text=auto eol=lf
+
+*.conf text eol=lf
+*.html text eol=lf
+*.ini text eol=lf
+*.js text eol=lf
+*.json text eol=lf
+*.md text eol=lf
+*.php text eol=lf
+*.sh text eol=lf
+*.yaml text eol=lf
+*.yml text eol=lf
+bin/console text eol=lf
+composer.lock text eol=lf merge=ours
+
+*.ico binary
+*.png binary
+
+update-deps.sh export-ignore

api/.gitignore

@@ -0,0 +1,3 @@
+/.env
+/helm/api-platform/charts/*
+!/helm/api-platform/charts/.gitignore

api/LICENSE

@@ -0,0 +1,19 @@
+Copyright (c) 2015-present Kévin Dunglas
+
+Permission is hereby granted, free of charge, to any person obtaining a copy
+of this software and associated documentation files (the "Software"), to deal
+in the Software without restriction, including without limitation the rights
+to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
+copies of the Software, and to permit persons to whom the Software is furnished
+to do so, subject to the following conditions:
+
+The above copyright notice and this permission notice shall be included in all
+copies or substantial portions of the Software.
+
+THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
+IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
+FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
+AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
+LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
+OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN
+THE SOFTWARE.

api/README.md

@@ -0,0 +1,21 @@
+# API
+
+## Setup
+
+### Requirements
+
+- docker
+- docker-compose
+
+### Installation
+
+```bash
+docker-compose build
+docker-compose up -d
+```
+
+For a one-liner
+
+```bash
+docker-compose up -d --build
+```

api/api/.dockerignore

@@ -0,0 +1,30 @@
+**/*.log
+**/*.md
+**/*.php~
+**/*.dist.php
+**/*.dist
+**/*.cache
+**/._*
+**/.dockerignore
+**/.DS_Store
+**/.git/
+**/.gitattributes
+**/.gitignore
+**/.gitmodules
+**/docker-compose.*.yaml
+**/docker-compose.*.yml
+**/docker-compose.yaml
+**/docker-compose.yml
+**/Dockerfile
+**/Thumbs.db
+.github/
+docs/
+public/bundles/
+tests/
+var/
+vendor/
+.editorconfig
+.env.*.local
+.env.local
+.env.local.php
+.env.test

api/api/.env

@@ -0,0 +1,47 @@
+# In all environments, the following files are loaded if they exist,
+# the latter taking precedence over the former:
+#
+#  * .env                contains default values for the environment variables needed by the app
+#  * .env.local          uncommitted file with local overrides
+#  * .env.$APP_ENV       committed environment-specific defaults
+#  * .env.$APP_ENV.local uncommitted environment-specific overrides
+#
+# Real environment variables win over .env files.
+#
+# DO NOT DEFINE PRODUCTION SECRETS IN THIS FILE NOR IN ANY OTHER COMMITTED FILES.
+# https://symfony.com/doc/current/configuration/secrets.html
+#
+# Run "composer dump-env prod" to compile .env files for production use (requires symfony/flex >=1.2).
+# https://symfony.com/doc/current/best_practices.html#use-environment-variables-for-infrastructure-configuration
+
+# API Platform distribution
+TRUSTED_PROXIES=127.0.0.1
+TRUSTED_HOSTS=^localhost$
+
+###> symfony/framework-bundle ###
+APP_ENV=dev
+APP_SECRET=!ChangeMe!
+###< symfony/framework-bundle ###
+
+###> doctrine/doctrine-bundle ###
+# Format described at https://www.doctrine-project.org/projects/doctrine-dbal/en/latest/reference/configuration.html#connecting-using-a-url
+# IMPORTANT: You MUST configure your server version, either here or in config/packages/doctrine.yaml
+#
+# DATABASE_URL="sqlite:///%kernel.project_dir%/var/data.db"
+# DATABASE_URL="mysql://app:!ChangeMe!@127.0.0.1:3306/app?serverVersion=8&charset=utf8mb4"
+DATABASE_URL="postgresql://app:!ChangeMe!@127.0.0.1:5432/app?serverVersion=14&charset=utf8"
+###< doctrine/doctrine-bundle ###
+
+###> nelmio/cors-bundle ###
+CORS_ALLOW_ORIGIN='^https?://(localhost|127\.0\.0\.1)(:[0-9]+)?$'
+###< nelmio/cors-bundle ###
+
+###> symfony/mercure-bundle ###
+# See https://symfony.com/doc/current/mercure.html#configuration
+# The URL of the Mercure hub, used by the app to publish updates (can be a local URL)
+MERCURE_URL=http://caddy/.well-known/mercure
+# The public URL of the Mercure hub, used by the browser to connect
+MERCURE_PUBLIC_URL=https://localhost/.well-known/mercure
+# The secret used to sign the JWTs
+MERCURE_JWT_SECRET="!ChangeThisMercureHubJWTSecretKey!"
+###< symfony/mercure-bundle ###

api/api/.env.test

@@ -0,0 +1,9 @@
+# define your env variables for the test env here
+KERNEL_CLASS='App\Kernel'
+APP_SECRET='$ecretf0rt3st'
+SYMFONY_DEPRECATIONS_HELPER=999999
+PANTHER_APP_ENV=panther
+PANTHER_ERROR_SCREENSHOT_DIR=./var/error-screenshots
+
+# API Platform distribution
+TRUSTED_HOSTS=^example\.com|localhost$

api/api/.gitignore

@@ -0,0 +1,21 @@
+/docker/db/data
+
+###> symfony/framework-bundle ###
+/.env.local
+/.env.local.php
+/.env.*.local
+/config/secrets/prod/prod.decrypt.private.php
+/public/bundles/
+/var/
+/vendor/
+###< symfony/framework-bundle ###
+
+###> friendsofphp/php-cs-fixer ###
+/.php-cs-fixer.php
+/.php-cs-fixer.cache
+###< friendsofphp/php-cs-fixer ###
+
+###> symfony/phpunit-bridge ###
+.phpunit.result.cache
+/phpunit.xml
+###< symfony/phpunit-bridge ###

api/api/.php-cs-fixer.dist.php

@@ -0,0 +1,13 @@
+<?php
+
+$finder = (new PhpCsFixer\Finder())
+    ->in(__DIR__)
+    ->exclude('var')
+;
+
+return (new PhpCsFixer\Config())
+    ->setRules([
+        '@Symfony' => true,
+    ])
+    ->setFinder($finder)
+;

api/api/Dockerfile

@@ -0,0 +1,139 @@
+#syntax=docker/dockerfile:1.4
+# Adapted from https://github.com/dunglas/symfony-docker
+
+# Prod image
+FROM php:8.1-fpm-alpine AS app_php
+
+ENV APP_ENV=prod
+
+WORKDIR /srv/app
+
+# persistent / runtime deps
+RUN apk add --no-cache \
+		acl \
+		fcgi \
+		file \
+		gettext \
+		git \
+	;
+
+RUN set -eux; \
+	apk add --no-cache --virtual .build-deps \
+		$PHPIZE_DEPS \
+		icu-data-full \
+		icu-dev \
+		libzip-dev \
+		zlib-dev \
+	; \
+	\
+	docker-php-ext-configure zip; \
+	docker-php-ext-install -j$(nproc) \
+		intl \
+		zip \
+	; \
+	pecl install \
+		apcu \
+	; \
+	pecl clear-cache; \
+	docker-php-ext-enable \
+		apcu \
+		opcache \
+	; \
+	\
+	runDeps="$( \
+		scanelf --needed --nobanner --format '%n#p' --recursive /usr/local/lib/php/extensions \
+			| tr ',' '\n' \
+			| sort -u \
+			| awk 'system("[ -e /usr/local/lib/" $1 " ]") == 0 { next } { print "so:" $1 }' \
+	)"; \
+	apk add --no-cache --virtual .app-phpexts-rundeps $runDeps; \
+	\
+	apk del .build-deps
+
+###> recipes ###
+###> doctrine/doctrine-bundle ###
+RUN apk add --no-cache --virtual .pgsql-deps postgresql-dev; \
+	docker-php-ext-install -j$(nproc) pdo_pgsql; \
+	apk add --no-cache --virtual .pgsql-rundeps so:libpq.so.5; \
+	apk del .pgsql-deps
+###< doctrine/doctrine-bundle ###
+###< recipes ###
+
+RUN mv "$PHP_INI_DIR/php.ini-production" "$PHP_INI_DIR/php.ini"
+COPY --link docker/php/conf.d/app.ini $PHP_INI_DIR/conf.d/
+COPY --link docker/php/conf.d/app.prod.ini $PHP_INI_DIR/conf.d/
+
+COPY --link docker/php/php-fpm.d/zz-docker.conf /usr/local/etc/php-fpm.d/zz-docker.conf
+RUN mkdir -p /var/run/php
+
+COPY --link docker/php/docker-healthcheck.sh /usr/local/bin/docker-healthcheck
+RUN chmod +x /usr/local/bin/docker-healthcheck
+
+HEALTHCHECK --interval=10s --timeout=3s --retries=3 CMD ["docker-healthcheck"]
+
+COPY --link docker/php/docker-entrypoint.sh /usr/local/bin/docker-entrypoint
+RUN chmod +x /usr/local/bin/docker-entrypoint
+
+ENTRYPOINT ["docker-entrypoint"]
+CMD ["php-fpm"]
+
+# https://getcomposer.org/doc/03-cli.md#composer-allow-superuser
+ENV COMPOSER_ALLOW_SUPERUSER=1
+ENV PATH="${PATH}:/root/.composer/vendor/bin"
+
+COPY --from=composer:2 --link /usr/bin/composer /usr/bin/composer
+
+# prevent the reinstallation of vendors at every changes in the source code
+COPY composer.* symfony.* ./
+RUN set -eux; \
+	composer install --prefer-dist --no-dev --no-autoloader --no-scripts --no-progress; \
+	composer clear-cache
+
+# copy sources
+COPY --link . .
+RUN rm -Rf docker/
+
+RUN set -eux; \
+	mkdir -p var/cache var/log; \
+	composer dump-autoload --classmap-authoritative --no-dev; \
+	composer dump-env prod; \
+	composer run-script --no-dev post-install-cmd; \
+	chmod +x bin/console; sync
+
+# Dev image
+FROM app_php AS app_php_dev
+
+ENV APP_ENV=dev XDEBUG_MODE=off
+VOLUME /srv/app/var/
+
+RUN rm $PHP_INI_DIR/conf.d/app.prod.ini; \
+	mv "$PHP_INI_DIR/php.ini" "$PHP_INI_DIR/php.ini-production"; \
+	mv "$PHP_INI_DIR/php.ini-development" "$PHP_INI_DIR/php.ini"
+
+COPY --link docker/php/conf.d/app.dev.ini $PHP_INI_DIR/conf.d/
+
+RUN set -eux; \
+	apk add --no-cache --virtual .build-deps $PHPIZE_DEPS; \
+	pecl install xdebug; \
+	docker-php-ext-enable xdebug; \
+	apk del .build-deps
+
+RUN rm -f .env.local.php
+
+# Build Caddy with the Mercure and Vulcain modules
+FROM caddy:2-builder-alpine AS app_caddy_builder
+
+RUN xcaddy build \
+	--with github.com/dunglas/mercure \
+	--with github.com/dunglas/mercure/caddy \
+	--with github.com/dunglas/vulcain \
+	--with github.com/dunglas/vulcain/caddy
+
+# Caddy image
+FROM caddy:2-alpine AS app_caddy
+
+WORKDIR /srv/app
+
+COPY --from=app_caddy_builder --link /usr/bin/caddy /usr/bin/caddy
+COPY --from=app_php --link /srv/app/public public/
+COPY --link docker/caddy/Caddyfile /etc/caddy/Caddyfile

api/api/README.md

@@ -0,0 +1,5 @@
+# API
+
+The API will be here.
+
+Refer to the [Getting Started Guide](https://api-platform.com/docs/distribution) for more information.

api/api/bin/console

@@ -0,0 +1,17 @@
+#!/usr/bin/env php
+<?php
+
+use App\Kernel;
+use Symfony\Bundle\FrameworkBundle\Console\Application;
+
+if (!is_file(dirname(__DIR__).'/vendor/autoload_runtime.php')) {
+    throw new LogicException('Symfony Runtime is missing. Try running "composer require symfony/runtime".');
+}
+
+require_once dirname(__DIR__).'/vendor/autoload_runtime.php';
+
+return function (array $context) {
+    $kernel = new Kernel($context['APP_ENV'], (bool) $context['APP_DEBUG']);
+
+    return new Application($kernel);
+};

api/api/bin/phpunit

@@ -0,0 +1,19 @@
+#!/usr/bin/env php
+<?php
+
+if (!ini_get('date.timezone')) {
+    ini_set('date.timezone', 'UTC');
+}
+
+if (is_file(dirname(__DIR__).'/vendor/phpunit/phpunit/phpunit')) {
+    define('PHPUNIT_COMPOSER_INSTALL', dirname(__DIR__).'/vendor/autoload.php');
+    require PHPUNIT_COMPOSER_INSTALL;
+    PHPUnit\TextUI\Command::main();
+} else {
+    if (!is_file(dirname(__DIR__).'/vendor/symfony/phpunit-bridge/bin/simple-phpunit.php')) {
+        echo "Unable to find the `simple-phpunit.php` script in `vendor/symfony/phpunit-bridge/bin/`.\n";
+        exit(1);
+    }
+
+    require dirname(__DIR__).'/vendor/symfony/phpunit-bridge/bin/simple-phpunit.php';
+}

api/api/composer.json

@@ -0,0 +1,99 @@
+{
+    "type": "project",
+    "license": "MIT",
+    "require": {
+        "php": ">=8.1",
+        "ext-ctype": "*",
+        "ext-iconv": "*",
+        "api-platform/core": "dev-main",
+        "composer/package-versions-deprecated": "1.11.99.5",
+        "doctrine/annotations": "^1.13",
+        "doctrine/doctrine-bundle": "^2.7",
+        "doctrine/doctrine-migrations-bundle": "^3.2",
+        "doctrine/orm": "^2.12",
+        "guzzlehttp/guzzle": "^7.4",
+        "nelmio/cors-bundle": "^2.2",
+        "phpdocumentor/reflection-docblock": "^5.3",
+        "symfony/asset": "6.1.*",
+        "symfony/console": "6.1.*",
+        "symfony/dotenv": "6.1.*",
+        "symfony/expression-language": "6.1.*",
+        "symfony/flex": "^2.2",
+        "symfony/framework-bundle": "6.1.*",
+        "symfony/mercure-bundle": "^0.3.5",
+        "symfony/monolog-bundle": "^3.8",
+        "symfony/property-access": "6.1.*",
+        "symfony/property-info": "6.1.*",
+        "symfony/runtime": "6.1.*",
+        "symfony/security-bundle": "6.1.*",
+        "symfony/serializer": "6.1.*",
+        "symfony/twig-bundle": "6.1.*",
+        "symfony/validator": "6.1.*",
+        "symfony/yaml": "6.1.*"
+    },
+    "require-dev": {
+        "api-platform/schema-generator": "^4.0",
+        "symfony/browser-kit": "6.1.*",
+        "symfony/css-selector": "6.1.*",
+        "symfony/debug-bundle": "6.1.*",
+        "symfony/maker-bundle": "^1.44",
+        "symfony/phpunit-bridge": "6.1.*",
+        "symfony/stopwatch": "6.1.*",
+        "symfony/var-dumper": "6.1.*",
+        "symfony/web-profiler-bundle": "6.1.*"
+    },
+    "config": {
+        "optimize-autoloader": true,
+        "preferred-install": {
+            "*": "dist"
+        },
+        "sort-packages": true,
+        "allow-plugins": {
+            "composer/package-versions-deprecated": true,
+            "symfony/flex": true,
+            "symfony/runtime": true
+        }
+    },
+    "autoload": {
+        "psr-4": {
+            "App\\": "src/"
+        }
+    },
+    "autoload-dev": {
+        "psr-4": {
+            "App\\Tests\\": "tests/"
+        }
+    },
+    "replace": {
+        "paragonie/random_compat": "2.*",
+        "symfony/polyfill-ctype": "*",
+        "symfony/polyfill-iconv": "*",
+        "symfony/polyfill-php80": "*",
+        "symfony/polyfill-php74": "*",
+        "symfony/polyfill-php73": "*",
+        "symfony/polyfill-php72": "*",
+        "symfony/polyfill-php71": "*"
+    },
+    "scripts": {
+        "auto-scripts": {
+            "cache:clear": "symfony-cmd",
+            "assets:install %PUBLIC_DIR%": "symfony-cmd"
+        },
+        "post-install-cmd": [
+            "@auto-scripts"
+        ],
+        "post-update-cmd": [
+            "@auto-scripts"
+        ]
+    },
+    "conflict": {
+        "symfony/symfony": "*"
+    },
+    "extra": {
+        "symfony": {
+            "allow-contrib": false,
+            "require": "6.1.*",
+            "docker": false
+        }
+    }
+}

api/api/config/bootstrap.php

@@ -0,0 +1,23 @@
+<?php
+
+use Symfony\Component\Dotenv\Dotenv;
+
+require dirname(__DIR__).'/vendor/autoload.php';
+
+if (!class_exists(Dotenv::class)) {
+    throw new LogicException('Please run "composer require symfony/dotenv" to load the ".env" files configuring the application.');
+}
+
+// Load cached env vars if the .env.local.php file exists
+// Run "composer dump-env prod" to create it (requires symfony/flex >=1.2)
+if (is_array($env = @include dirname(__DIR__).'/.env.local.php') && (!isset($env['APP_ENV']) || ($_SERVER['APP_ENV'] ?? $_ENV['APP_ENV'] ?? $env['APP_ENV']) === $env['APP_ENV'])) {
+    (new Dotenv())->usePutenv(false)->populate($env);
+} else {
+    // load all the .env files
+    (new Dotenv())->usePutenv(false)->loadEnv(dirname(__DIR__).'/.env');
+}
+
+$_SERVER += $_ENV;
+$_SERVER['APP_ENV'] = $_ENV['APP_ENV'] = ($_SERVER['APP_ENV'] ?? $_ENV['APP_ENV'] ?? null) ?: 'dev';
+$_SERVER['APP_DEBUG'] = $_SERVER['APP_DEBUG'] ?? $_ENV['APP_DEBUG'] ?? 'prod' !== $_SERVER['APP_ENV'];
+$_SERVER['APP_DEBUG'] = $_ENV['APP_DEBUG'] = (int) $_SERVER['APP_DEBUG'] || filter_var($_SERVER['APP_DEBUG'], FILTER_VALIDATE_BOOLEAN) ? '1' : '0';

api/api/config/bundles.php

@@ -0,0 +1,16 @@
+<?php
+
+return [
+    Symfony\Bundle\FrameworkBundle\FrameworkBundle::class => ['all' => true],
+    Symfony\Bundle\SecurityBundle\SecurityBundle::class => ['all' => true],
+    Symfony\Bundle\MercureBundle\MercureBundle::class => ['all' => true],
+    Symfony\Bundle\TwigBundle\TwigBundle::class => ['all' => true],
+    Doctrine\Bundle\DoctrineBundle\DoctrineBundle::class => ['all' => true],
+    ApiPlatform\Symfony\Bundle\ApiPlatformBundle::class => ['all' => true],
+    Nelmio\CorsBundle\NelmioCorsBundle::class => ['all' => true],
+    Symfony\Bundle\WebProfilerBundle\WebProfilerBundle::class => ['dev' => true, 'test' => true],
+    Symfony\Bundle\MakerBundle\MakerBundle::class => ['dev' => true],
+    Doctrine\Bundle\MigrationsBundle\DoctrineMigrationsBundle::class => ['all' => true],
+    Symfony\Bundle\MonologBundle\MonologBundle::class => ['all' => true],
+    Symfony\Bundle\DebugBundle\DebugBundle::class => ['dev' => true, 'test' => true],
+];

api/api/config/packages/api_platform.yaml

@@ -0,0 +1,10 @@
+api_platform:
+    title: Hello API Platform
+    version: 1.0.0
+    # Mercure integration, remove if unwanted
+    mercure: ~
+    # Good cache defaults for REST APIs
+    defaults:
+        stateless: true
+        cache_headers:
+            vary: ['Content-Type', 'Authorization', 'Origin']

api/api/config/packages/cache.yaml

@@ -0,0 +1,19 @@
+framework:
+    cache:
+        # Unique name of your app: used to compute stable namespaces for cache keys.
+        #prefix_seed: your_vendor_name/app_name
+
+        # The "app" cache stores to the filesystem by default.
+        # The data in this cache should persist between deploys.
+        # Other options include:
+
+        # Redis
+        #app: cache.adapter.redis
+        #default_redis_provider: redis://localhost
+
+        # APCu (not recommended with heavy random-write workloads as memory fragmentation can cause perf issues)
+        #app: cache.adapter.apcu
+
+        # Namespaced pools use the above "app" backend by default
+        #pools:
+            #my.dedicated.cache: null

api/api/config/packages/debug.yaml

@@ -0,0 +1,5 @@
+when@dev:
+    debug:
+        # Forwards VarDumper Data clones to a centralized server allowing to inspect dumps on CLI or in your browser.
+        # See the "server:dump" command to start a new server.
+        dump_destination: "tcp://%env(VAR_DUMPER_SERVER)%"

api/api/config/packages/dev/debug.yaml

@@ -0,0 +1,4 @@
+debug:
+    # Forwards VarDumper Data clones to a centralized server allowing to inspect dumps on CLI or in your browser.
+    # See the "server:dump" command to start a new server.
+    dump_destination: "tcp://%env(VAR_DUMPER_SERVER)%"

api/api/config/packages/dev/monolog.yaml

@@ -0,0 +1,19 @@
+monolog:
+    handlers:
+        main:
+            type: stream
+            path: "%kernel.logs_dir%/%kernel.environment%.log"
+            level: debug
+            channels: ["!event"]
+        # uncomment to get logging in your browser
+        # you may have to allow bigger header sizes in your Web server configuration
+        #firephp:
+        #    type: firephp
+        #    level: info
+        #chromephp:
+        #    type: chromephp
+        #    level: info
+        console:
+            type: console
+            process_psr_3_messages: false
+            channels: ["!event", "!doctrine", "!console"]

api/api/config/packages/dev/routing.yaml

@@ -0,0 +1,3 @@
+framework:
+    router:
+        strict_requirements: true

api/api/config/packages/dev/web_profiler.yaml

@@ -0,0 +1,6 @@
+web_profiler:
+    toolbar: true
+    intercept_redirects: false
+
+framework:
+    profiler: { only_exceptions: false }

api/api/config/packages/doctrine.yaml

@@ -0,0 +1,42 @@
+doctrine:
+    dbal:
+        url: '%env(resolve:DATABASE_URL)%'
+
+        # IMPORTANT: You MUST configure your server version,
+        # either here or in the DATABASE_URL env var (see .env file)
+        #server_version: '13'
+    orm:
+        auto_generate_proxy_classes: true
+        naming_strategy: doctrine.orm.naming_strategy.underscore_number_aware
+        auto_mapping: true
+        mappings:
+            App:
+                is_bundle: false
+                dir: '%kernel.project_dir%/src/Entity'
+                prefix: 'App\Entity'
+                alias: App
+
+when@test:
+    doctrine:
+        dbal:
+            # "TEST_TOKEN" is typically set by ParaTest
+            dbname_suffix: '_test%env(default::TEST_TOKEN)%'
+
+when@prod:
+    doctrine:
+        orm:
+            auto_generate_proxy_classes: false
+            query_cache_driver:
+                type: pool
+                pool: doctrine.system_cache_pool
+            result_cache_driver:
+                type: pool
+                pool: doctrine.result_cache_pool
+
+    framework:
+        cache:
+            pools:
+                doctrine.result_cache_pool:
+                    adapter: cache.app
+                doctrine.system_cache_pool:
+                    adapter: cache.system

api/api/config/packages/doctrine_migrations.yaml

@@ -0,0 +1,6 @@
+doctrine_migrations:
+    migrations_paths:
+        # namespace is arbitrary but should be different from App\Migrations
+        # as migrations classes should NOT be autoloaded
+        'DoctrineMigrations': '%kernel.project_dir%/migrations'
+    enable_profiler: false

api/api/config/packages/framework.yaml

@@ -0,0 +1,29 @@
+# see https://symfony.com/doc/current/reference/configuration/framework.html
+framework:
+    secret: '%env(APP_SECRET)%'
+    #csrf_protection: true
+    http_method_override: false
+    
+    trusted_proxies: '%env(TRUSTED_PROXIES)%'
+    trusted_hosts: '%env(TRUSTED_HOSTS)%'
+    # See https://caddyserver.com/docs/caddyfile/directives/reverse_proxy#headers
+    trusted_headers: [ 'x-forwarded-for', 'x-forwarded-proto' ]
+
+    # Enables session support. Note that the session will ONLY be started if you read or write from it.
+    # Remove or comment this section to explicitly disable session support.
+    #session:
+    #    handler_id: null
+    #    cookie_secure: auto
+    #    cookie_samesite: lax
+    #    storage_factory_id: session.storage.factory.native
+
+    #esi: true
+    #fragments: true
+    php_errors:
+        log: true
+
+when@test:
+    framework:
+        test: true
+        #session:
+        #    storage_factory_id: session.storage.factory.mock_file

api/api/config/packages/mercure.yaml

@@ -0,0 +1,8 @@
+mercure:
+    hubs:
+        default:
+            url: '%env(MERCURE_URL)%'
+            public_url: '%env(MERCURE_PUBLIC_URL)%'
+            jwt:
+                secret: '%env(MERCURE_JWT_SECRET)%'
+                publish: '*'

api/api/config/packages/monolog.yaml

@@ -0,0 +1,61 @@
+monolog:
+    channels:
+        - deprecation # Deprecations are logged in the dedicated "deprecation" channel when it exists
+
+when@dev:
+    monolog:
+        handlers:
+            main:
+                type: stream
+                path: "%kernel.logs_dir%/%kernel.environment%.log"
+                level: debug
+                channels: ["!event"]
+            # uncomment to get logging in your browser
+            # you may have to allow bigger header sizes in your Web server configuration
+            #firephp:
+            #    type: firephp
+            #    level: info
+            #chromephp:
+            #    type: chromephp
+            #    level: info
+            console:
+                type: console
+                process_psr_3_messages: false
+                channels: ["!event", "!doctrine", "!console"]
+
+when@test:
+    monolog:
+        handlers:
+            main:
+                type: fingers_crossed
+                action_level: error
+                handler: nested
+                excluded_http_codes: [404, 405]
+                channels: ["!event"]
+            nested:
+                type: stream
+                path: "%kernel.logs_dir%/%kernel.environment%.log"
+                level: debug
+
+when@prod:
+    monolog:
+        handlers:
+            main:
+                type: fingers_crossed
+                action_level: error
+                handler: nested
+                excluded_http_codes: [404, 405]
+                buffer_size: 50 # How many messages should be saved? Prevent memory leaks
+            nested:
+                type: stream
+                path: php://stderr
+                level: debug
+                formatter: monolog.formatter.json
+            console:
+                type: console
+                process_psr_3_messages: false
+                channels: ["!event", "!doctrine"]
+            deprecation:
+                type: stream
+                channels: [deprecation]
+                path: php://stderr

api/api/config/packages/nelmio_cors.yaml

@@ -0,0 +1,10 @@
+nelmio_cors:
+    defaults:
+        origin_regex: true
+        allow_origin: ['%env(CORS_ALLOW_ORIGIN)%']
+        allow_methods: ['GET', 'OPTIONS', 'POST', 'PUT', 'PATCH', 'DELETE']
+        allow_headers: ['Content-Type', 'Authorization', 'Preload', 'Fields']
+        expose_headers: ['Link']
+        max_age: 3600
+    paths:
+        '^/': null

api/api/config/packages/prod/deprecations.yaml

@@ -0,0 +1,8 @@
+# As of Symfony 5.1, deprecations are logged in the dedicated "deprecation" channel when it exists
+#monolog:
+#    channels: [deprecation]
+#    handlers:
+#        deprecation:
+#            type: stream
+#            channels: [deprecation]
+#            path: php://stderr

api/api/config/packages/prod/doctrine.yaml

@@ -0,0 +1,17 @@
+doctrine:
+    orm:
+        auto_generate_proxy_classes: false
+        query_cache_driver:
+            type: pool
+            pool: doctrine.system_cache_pool
+        result_cache_driver:
+            type: pool
+            pool: doctrine.result_cache_pool
+
+framework:
+    cache:
+        pools:
+            doctrine.result_cache_pool:
+                adapter: cache.app
+            doctrine.system_cache_pool:
+                adapter: cache.system

api/api/config/packages/prod/monolog.yaml

@@ -0,0 +1,17 @@
+monolog:
+    handlers:
+        main:
+            type: fingers_crossed
+            action_level: error
+            handler: nested
+            excluded_http_codes: [404, 405]
+            buffer_size: 50 # How many messages should be saved? Prevent memory leaks
+        nested:
+            type: stream
+            path: php://stderr
+            level: debug
+            formatter: monolog.formatter.json
+        console:
+            type: console
+            process_psr_3_messages: false
+            channels: ["!event", "!doctrine"]

api/api/config/packages/routing.yaml

@@ -0,0 +1,12 @@
+framework:
+    router:
+        utf8: true
+
+        # Configure how to generate URLs in non-HTTP contexts, such as CLI commands.
+        # See https://symfony.com/doc/current/routing.html#generating-urls-in-commands
+        #default_uri: http://localhost
+
+when@prod:
+    framework:
+        router:
+            strict_requirements: null

api/api/config/packages/security.yaml

@@ -0,0 +1,39 @@
+security:
+    # https://symfony.com/doc/current/security.html#registering-the-user-hashing-passwords
+    password_hashers:
+        Symfony\Component\Security\Core\User\PasswordAuthenticatedUserInterface: 'auto'
+    # https://symfony.com/doc/current/security.html#loading-the-user-the-user-provider
+    providers:
+        users_in_memory: { memory: null }
+    firewalls:
+        dev:
+            pattern: ^/(_(profiler|wdt)|css|images|js)/
+            security: false
+        main:
+            lazy: true
+            provider: users_in_memory
+
+            # activate different ways to authenticate
+            # https://symfony.com/doc/current/security.html#the-firewall
+
+            # https://symfony.com/doc/current/security/impersonating_user.html
+            # switch_user: true
+
+    # Easy way to control access for large sections of your site
+    # Note: Only the *first* access control that matches will be used
+    access_control:
+        # - { path: ^/admin, roles: ROLE_ADMIN }
+        # - { path: ^/profile, roles: ROLE_USER }
+
+when@test:
+    security:
+        password_hashers:
+            # By default, password hashers are resource intensive and take time. This is
+            # important to generate secure password hashes. In tests however, secure hashes
+            # are not important, waste resources and increase test times. The following
+            # reduces the work factor to the lowest possible values.
+            Symfony\Component\Security\Core\User\PasswordAuthenticatedUserInterface:
+                algorithm: auto
+                cost: 4 # Lowest possible value for bcrypt
+                time_cost: 3 # Lowest possible value for argon
+                memory_cost: 10 # Lowest possible value for argon

api/api/config/packages/test/doctrine.yaml

@@ -0,0 +1,4 @@
+doctrine:
+    dbal:
+        # "TEST_TOKEN" is typically set by ParaTest
+        dbname_suffix: '_test%env(default::TEST_TOKEN)%'

api/api/config/packages/test/monolog.yaml

@@ -0,0 +1,12 @@
+monolog:
+    handlers:
+        main:
+            type: fingers_crossed
+            action_level: error
+            handler: nested
+            excluded_http_codes: [404, 405]
+            channels: ["!event"]
+        nested:
+            type: stream
+            path: "%kernel.logs_dir%/%kernel.environment%.log"
+            level: debug

api/api/config/packages/test/routing.yaml

@@ -0,0 +1,3 @@
+framework:
+    router:
+        strict_requirements: true

api/api/config/packages/test/validator.yaml

@@ -0,0 +1,3 @@
+framework:
+    validation:
+        not_compromised_password: false

api/api/config/packages/test/web_profiler.yaml

@@ -0,0 +1,6 @@
+web_profiler:
+    toolbar: false
+    intercept_redirects: false
+
+framework:
+    profiler: { collect: false }

api/api/config/packages/twig.yaml

@@ -0,0 +1,6 @@
+twig:
+    default_path: '%kernel.project_dir%/templates'
+
+when@test:
+    twig:
+        strict_variables: true

api/api/config/packages/validator.yaml

@@ -0,0 +1,13 @@
+framework:
+    validation:
+        email_validation_mode: html5
+
+        # Enables validator auto-mapping support.
+        # For instance, basic validation constraints will be inferred from Doctrine's metadata.
+        #auto_mapping:
+        #    App\Entity\: []
+
+when@test:
+    framework:
+        validation:
+            not_compromised_password: false

api/api/config/packages/web_profiler.yaml

@@ -0,0 +1,17 @@
+when@dev:
+    web_profiler:
+        toolbar: true
+        intercept_redirects: false
+
+    framework:
+        profiler:
+            only_exceptions: false
+            collect_serializer_data: true
+
+when@test:
+    web_profiler:
+        toolbar: false
+        intercept_redirects: false
+
+    framework:
+        profiler: { collect: false }

api/api/config/preload.php

@@ -0,0 +1,5 @@
+<?php
+
+if (file_exists(dirname(__DIR__).'/var/cache/prod/App_KernelProdContainer.preload.php')) {
+    require dirname(__DIR__).'/var/cache/prod/App_KernelProdContainer.preload.php';
+}

api/api/config/routes.yaml

@@ -0,0 +1,3 @@
+controllers:
+    resource: ../src/Controller/
+    type: attribute

api/api/config/routes/annotations.yaml

@@ -0,0 +1,7 @@
+controllers:
+    resource: ../../src/Controller/
+    type: annotation
+
+kernel:
+    resource: ../../src/Kernel.php
+    type: annotation

api/api/config/routes/api_platform.yaml

@@ -0,0 +1,3 @@
+api_platform:
+    resource: .
+    type: api_platform

api/api/config/routes/dev/web_profiler.yaml

@@ -0,0 +1,7 @@
+web_profiler_wdt:
+    resource: '@WebProfilerBundle/Resources/config/routing/wdt.xml'
+    prefix: /_wdt
+
+web_profiler_profiler:
+    resource: '@WebProfilerBundle/Resources/config/routing/profiler.xml'
+    prefix: /_profiler

api/api/config/routes/framework.yaml

@@ -0,0 +1,4 @@
+when@dev:
+    _errors:
+        resource: '@FrameworkBundle/Resources/config/routing/errors.xml'
+        prefix: /_error

api/api/config/routes/web_profiler.yaml

@@ -0,0 +1,8 @@
+when@dev:
+    web_profiler_wdt:
+        resource: '@WebProfilerBundle/Resources/config/routing/wdt.xml'
+        prefix: /_wdt
+
+    web_profiler_profiler:
+        resource: '@WebProfilerBundle/Resources/config/routing/profiler.xml'
+        prefix: /_profiler

api/api/config/services.yaml

@@ -0,0 +1,24 @@
+# This file is the entry point to configure your own services.
+# Files in the packages/ subdirectory configure your dependencies.
+
+# Put parameters here that don't need to change on each machine where the app is deployed
+# https://symfony.com/doc/current/best_practices.html#use-parameters-for-application-configuration
+parameters:
+
+services:
+    # default configuration for services in *this* file
+    _defaults:
+        autowire: true      # Automatically injects dependencies in your services.
+        autoconfigure: true # Automatically registers your services as commands, event subscribers, etc.
+
+    # makes classes in src/ available to be used as services
+    # this creates a service per class whose id is the fully-qualified class name
+    App\:
+        resource: '../src/'
+        exclude:
+            - '../src/DependencyInjection/'
+            - '../src/Entity/'
+            - '../src/Kernel.php'
+
+    # add more service definitions when explicit configuration is needed
+    # please note that last definitions always *replace* previous ones

api/api/docker/caddy/Caddyfile

@@ -0,0 +1,57 @@
+{
+    # Debug
+    {$DEBUG}
+    # HTTP/3 support
+    servers {
+        protocol {
+            experimental_http3
+        }
+    }
+}
+
+{$SERVER_NAME}
+
+log
+
+# Matches requests for HTML documents, for static files and for Next.js files,
+# except for known API paths and paths with extensions handled by API Platform
+@pwa expression `(
+        header({'Accept': '*text/html*'})
+        && !path(
+            '/docs*', '/graphql*', '/bundles*', '/contexts*', '/_profiler*', '/_wdt*',
+            '*.json*', '*.html', '*.csv', '*.yml', '*.yaml', '*.xml'
+        )
+    )
+    || path('/favicon.ico', '/manifest.json', '/robots.txt', '/_next*', '/sitemap*')`
+
+route {
+    root * /srv/app/public
+    mercure {
+        # Transport to use (default to Bolt)
+        transport_url {$MERCURE_TRANSPORT_URL:bolt:///data/mercure.db}
+        # Publisher JWT key
+        publisher_jwt {env.MERCURE_PUBLISHER_JWT_KEY} {env.MERCURE_PUBLISHER_JWT_ALG}
+        # Subscriber JWT key
+        subscriber_jwt {env.MERCURE_SUBSCRIBER_JWT_KEY} {env.MERCURE_SUBSCRIBER_JWT_ALG}
+        # Allow anonymous subscribers (double-check that it's what you want)
+        anonymous
+        # Enable the subscription API (double-check that it's what you want)
+        subscriptions
+        # Extra directives
+        {$MERCURE_EXTRA_DIRECTIVES}
+    }
+    vulcain
+
+    # Add links to the API docs and to the Mercure Hub if not set explicitly (e.g. the PWA)
+    header ?Link `</docs.jsonld>; rel="http://www.w3.org/ns/hydra/core#apiDocumentation", </.well-known/mercure>; rel="mercure"`
+    # Disable Topics tracking if not enabled explicitly: https://github.com/jkarlin/topics
+    header ?Permissions-Policy "browsing-topics=()"
+
+    # Comment the following line if you don't want Next.js to catch requests for HTML documents.
+    # In this case, they will be handled by the PHP app.
+    reverse_proxy @pwa http://{$PWA_UPSTREAM}
+
+    php_fastcgi unix//var/run/php/php-fpm.sock
+    encode zstd gzip
+    file_server
+}

api/api/docker/php/conf.d/app.dev.ini

@@ -0,0 +1,5 @@
+; See https://docs.docker.com/desktop/networking/#i-want-to-connect-from-a-container-to-a-service-on-the-host
+; See https://github.com/docker/for-linux/issues/264
+; The `client_host` below may optionally be replaced with `discover_client_host=yes`
+; Add `start_with_request=yes` to start debug session on each request
+xdebug.client_host = 'host.docker.internal'

api/api/docker/php/conf.d/app.ini

@@ -0,0 +1,13 @@
+expose_php = 0
+date.timezone = UTC
+apc.enable_cli = 1
+session.use_strict_mode = 1
+zend.detect_unicode = 0
+
+; https://symfony.com/doc/current/performance.html
+realpath_cache_size = 4096K
+realpath_cache_ttl = 600
+opcache.interned_strings_buffer = 16
+opcache.max_accelerated_files = 20000
+opcache.memory_consumption = 256
+opcache.enable_file_override = 1

api/api/docker/php/conf.d/app.prod.ini

@@ -0,0 +1,2 @@
+opcache.preload_user = www-data
+opcache.preload = /srv/app/config/preload.php

api/api/docker/php/docker-entrypoint.sh

@@ -0,0 +1,45 @@
+#!/bin/sh
+set -e
+
+# first arg is `-f` or `--some-option`
+if [ "${1#-}" != "$1" ]; then
+	set -- php-fpm "$@"
+fi
+
+if [ "$1" = 'php-fpm' ] || [ "$1" = 'php' ] || [ "$1" = 'bin/console' ]; then
+	setfacl -R -m u:www-data:rwX -m u:"$(whoami)":rwX var
+	setfacl -dR -m u:www-data:rwX -m u:"$(whoami)":rwX var
+
+	if [ "$APP_ENV" != 'prod' ]; then
+		composer install --prefer-dist --no-progress --no-interaction
+	fi
+
+	if grep -q DATABASE_URL= .env; then
+		echo "Waiting for database to be ready..."
+		ATTEMPTS_LEFT_TO_REACH_DATABASE=60
+		until [ $ATTEMPTS_LEFT_TO_REACH_DATABASE -eq 0 ] || DATABASE_ERROR=$(php bin/console dbal:run-sql -q "SELECT 1" 2>&1); do
+			if [ $? -eq 255 ]; then
+				# If the Doctrine command exits with 255, an unrecoverable error occurred
+				ATTEMPTS_LEFT_TO_REACH_DATABASE=0
+				break
+			fi
+			sleep 1
+			ATTEMPTS_LEFT_TO_REACH_DATABASE=$((ATTEMPTS_LEFT_TO_REACH_DATABASE - 1))
+			echo "Still waiting for database to be ready... Or maybe the database is not reachable. $ATTEMPTS_LEFT_TO_REACH_DATABASE attempts left."
+		done
+
+		if [ $ATTEMPTS_LEFT_TO_REACH_DATABASE -eq 0 ]; then
+			echo "The database is not up or not reachable:"
+			echo "$DATABASE_ERROR"
+			exit 1
+		else
+			echo "The database is now ready and reachable"
+		fi
+
+		if [ "$( find ./migrations -iname '*.php' -print -quit )" ]; then
+			php bin/console doctrine:migrations:migrate --no-interaction
+		fi
+	fi
+fi
+
+exec docker-php-entrypoint "$@"

api/api/docker/php/docker-healthcheck.sh

@@ -0,0 +1,8 @@
+#!/bin/sh
+set -e
+
+if env -i REQUEST_METHOD=GET SCRIPT_NAME=/ping SCRIPT_FILENAME=/ping cgi-fcgi -bind -connect /var/run/php/php-fpm.sock; then
+	exit 0
+fi
+
+exit 1

api/api/docker/php/php-fpm.d/zz-docker.conf

@@ -0,0 +1,8 @@
+[global]
+daemonize = no
+process_control_timeout = 20
+
+[www]
+listen = /var/run/php/php-fpm.sock
+listen.mode = 0666
+ping.path = /ping

api/api/migrations/Version20210930074739.php

@@ -0,0 +1,34 @@
+<?php
+
+declare(strict_types=1);
+
+namespace DoctrineMigrations;
+
+use Doctrine\DBAL\Schema\Schema;
+use Doctrine\Migrations\AbstractMigration;
+
+/**
+ * Auto-generated Migration: Please modify to your needs!
+ */
+final class Version20210930074739 extends AbstractMigration
+{
+    public function getDescription(): string
+    {
+        return '';
+    }
+
+    public function up(Schema $schema): void
+    {
+        // this up() migration is auto-generated, please modify it to your needs
+        $this->addSql('CREATE SEQUENCE greeting_id_seq INCREMENT BY 1 MINVALUE 1 START 1');
+        $this->addSql('CREATE TABLE greeting (id INT NOT NULL, name VARCHAR(255) NOT NULL, PRIMARY KEY(id))');
+    }
+
+    public function down(Schema $schema): void
+    {
+        // this down() migration is auto-generated, please modify it to your needs
+        $this->addSql('CREATE SCHEMA public');
+        $this->addSql('DROP SEQUENCE greeting_id_seq CASCADE');
+        $this->addSql('DROP TABLE greeting');
+    }
+}

api/api/phpunit.xml.dist

@@ -0,0 +1,42 @@
+<?xml version="1.0" encoding="UTF-8"?>
+
+<!-- https://phpunit.readthedocs.io/en/latest/configuration.html -->
+<phpunit xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
+         xsi:noNamespaceSchemaLocation="vendor/phpunit/phpunit/phpunit.xsd"
+         backupGlobals="false"
+         colors="true"
+         bootstrap="tests/bootstrap.php"
+         convertDeprecationsToExceptions="false"
+>
+    <php>
+        <ini name="display_errors" value="1" />
+        <ini name="error_reporting" value="-1" />
+        <server name="APP_ENV" value="test" force="true" />
+        <server name="SHELL_VERBOSITY" value="-1" />
+        <server name="SYMFONY_PHPUNIT_REMOVE" value="" />
+        <server name="SYMFONY_PHPUNIT_VERSION" value="9.5" />
+    </php>
+
+    <testsuites>
+        <testsuite name="Project Test Suite">
+            <directory>tests</directory>
+        </testsuite>
+    </testsuites>
+
+    <coverage processUncoveredFiles="true">
+        <include>
+            <directory suffix=".php">src</directory>
+        </include>
+    </coverage>
+
+    <listeners>
+        <listener class="Symfony\Bridge\PhpUnit\SymfonyTestsListener" />
+    </listeners>
+
+    <!-- Run `composer require symfony/panther` before enabling this extension -->
+    <!--
+    <extensions>
+        <extension class="Symfony\Component\Panther\ServerExtension" />
+    </extensions>
+    -->
+</phpunit>

api/api/public/index.php

@@ -0,0 +1,9 @@
+<?php
+
+use App\Kernel;
+
+require_once dirname(__DIR__).'/vendor/autoload_runtime.php';
+
+return function (array $context) {
+    return new Kernel($context['APP_ENV'], (bool) $context['APP_DEBUG']);
+};

api/api/src/Entity/MedicineAdministrationWay.php

@@ -0,0 +1,44 @@
+<?php
+
+use ApiPlatform\Metadata\ApiResource;
+use ApiPlatform\Metadata\Link;
+use Doctrine\Common\Collections\ArrayCollection;
+use Doctrine\ORM\Mapping as ORM;
+
+/**
+ * A medicine administration way.
+ * i.e. "comprime secable voie orale" for instance
+ */
+#[ORM\Entity]
+class MedicineAdministrationWay
+{
+    #[ORM\Id, ORM\Column,ORM\GeneratedValue]
+    private ?int $id = null;
+
+    /**
+     * This CIS (