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Add config for scientific project report

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This commit is contained in:
Samuel Ortion 2024-03-29 17:38:18 +01:00
parent 62bb0cd205
commit 1d460760e7
3 changed files with 112 additions and 30 deletions
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94
config.org
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@ -12,6 +12,14 @@
doom-serif-font (font-spec :family "Fira Code Nerd Font" :size 12 :weight 'light)) doom-serif-font (font-spec :family "Fira Code Nerd Font" :size 12 :weight 'light))
#+end_src #+end_src
* UI * UI
#+begin_src emacs-lisp :tangle yes
(setq confirm-kill-emacs nil)
#+end_src
** Expand initial Frame
#+begin_src emacs-lisp :tangle yes
(add-hook 'window-setup-hook 'toggle-frame-maximized t)
#+end_src
* Edition modes * Edition modes
@ -50,9 +58,30 @@ Add custom LaTeX classes to ox-latex class.
("\\subsection{%s}" . "\\subsection*{%s}") ("\\subsection{%s}" . "\\subsection*{%s}")
("\\subsubsection{%s}" . "\\subsubsection*{%s}") ("\\subsubsection{%s}" . "\\subsubsection*{%s}")
("\\paragraph{%s}" . "\\paragraph*{%s}") ("\\paragraph{%s}" . "\\paragraph*{%s}")
("\\subparagraph{%s}" . "\\subparagraph*{%s}")))
(add-to-list 'org-latex-classes
'("scrreprt" "\\documentclass{scrreprt}"
("\\part{%s}" . "\\part*{%s}")
("\\chapter{%s}" . "\\chapter*{%s}")
("\\section{%s}" . "\\section*{%s}")
("\\subsection{%s}" . "\\subsection*{%s}")
("\\subsubsection{%s}" . "\\subsubsection*{%s}")
("\\paragraph{%s}" . "\\paragraph*{%s}")
("\\subparagraph{%s}" . "\\subparagraph*{%s}")))
(add-to-list 'org-latex-classes
'("lamme2024" "\\documentclass{scrartcl}
[NO-DEFAULT-PACKAGES]
[NO-PACKAGES]
[EXTRA]
"
("\\part{%s}" . "\\part*{%s}")
("\\section{%s}" . "\\section*{%s}")
("\\subsection{%s}" . "\\subsection*{%s}")
("\\subsubsection{%s}" . "\\subsubsection*{%s}")
("\\subsubsubsection{%s}" . "\\subsubsubsection*{%s}")
("\\paragraph{%s}" . "\\paragraph*{%s}")
("\\subparagraph{%s}" . "\\subparagraph*{%s}")))) ("\\subparagraph{%s}" . "\\subparagraph*{%s}"))))
(eval-after-load "ox-latex" (eval-after-load "ox-latex"
#'custom-latex-classes) #'custom-latex-classes)
#+end_src #+end_src
@ -82,17 +111,19 @@ Disable LateX preview in Org-mode by default
*** Syntax highlighting in Org-mode *** Syntax highlighting in Org-mode
#+begin_src emacs-lisp :tangle yes #+begin_src emacs-lisp :tangle yes
(setq org-highlight-latex-and-related '(latex script entities)) ; (setq org-highlight-latex-and-related '(latex script entities))
(setq org-highlight-latex-and-related '(native))
;; (add-hook 'org-mode-hook #'turn-on-org-cdlatex)
#+end_src #+end_src
\(i \in \mathbf{N}\) \(i \in \mathbf{N}\)
** Expand initial Frame *** Proper indentation in algorithmic
#+begin_src emacs-lisp :tangle yes #+begin_src emacs-lisp :tangle yes
(add-hook 'window-setup-hook 'toggle-frame-maximized t) (with-eval-after-load 'latex
(add-to-list 'LaTeX-indent-environment-list '("algorithmic" current-indentation)))
#+end_src #+end_src
** Enable conda environment in a Org-mode ** Enable conda environment in a Org-mode
#+begin_src emacs-lisp :tangle no #+begin_src emacs-lisp :tangle no
@ -102,7 +133,14 @@ Disable LateX preview in Org-mode by default
** Org-roam ** Org-roam
Set the roam directory Set the roam directory
#+begin_src emacs-lisp #+begin_src emacs-lisp
(setq org-roam-directory "~/sync/Documents/org/roam/") (setq org-roam-directory "~/Documents/org/roam/")
#+end_src
** =typst=
#+begin_src emacs-lisp :tangle no
(add-to-list 'treesit-language-source-alist
'(typst "https://github.com/uben0/tree-sitter-typst"))
(treesit-install-language-grammar 'typst)
#+end_src #+end_src
* Emacs Server & Emacs Client * Emacs Server & Emacs Client
@ -154,7 +192,7 @@ systemctl --user enable --now emacs
;; (setq plantuml-default-exec-mode 'jar) ;; (setq plantuml-default-exec-mode 'jar)
(setq plantuml-executable-path "/usr/bin/plantuml") (setq plantuml-executable-path "/usr/bin/plantuml")
;; setup plantuml for org-babel ;; setup plantuml for org-babel
(add-to-list 'org-src-lang-modes '("plantuml" . plantuml)) ;; (add-to-list 'org-src-lang-modes '("plantuml" . plantuml))
(setq org-plantuml-exec-mode 'executable) (setq org-plantuml-exec-mode 'executable)
(setq org-plantuml-executable-path plantuml-executable-path) (setq org-plantuml-executable-path plantuml-executable-path)
;; (require 'ob-plantuml) ; OBSOLETED ;; (require 'ob-plantuml) ; OBSOLETED
@ -164,3 +202,43 @@ systemctl --user enable --now emacs
(add-to-list 'auto-mode-alist '("\\.puml\\'" . plantuml-mode)) (add-to-list 'auto-mode-alist '("\\.puml\\'" . plantuml-mode))
(add-to-list 'auto-mode-alist '("\\.plantuml\\'" . plantuml-mode)) (add-to-list 'auto-mode-alist '("\\.plantuml\\'" . plantuml-mode))
#+end_src #+end_src
* Org-ref-acronyms
#+begin_src emacs-lisp :tangle yes
(after! org
(require 'org-ref)
(add-to-list 'org-latex-classes
'("scientific-project"
"\\documentclass{scrreprt}
[NO-DEFAULT-PACKAGES]
[EXTRA]
\\makeindex
\\makeglossaries "
; ("\\part{%s}" . "\\part*{%s}")
("\\chapter{%s}" . "\\chapter{%s}")
("\\section{%s}" . "\\section*{%s}")
("\\subsection{%s}" . "\\subsection*{%s}")
("\\subsubsection{%s}" . "\\subsubsection*{%s}")
("\\paragraph{%s}" . "\\paragraph*{%s}")
("\\subparagraph{%s}" . "\\subparagraph*{%s}")))
(add-hook 'org-export-before-parsing-hook #'org-ref-acronyms-before-parsing)
(add-hook 'org-export-before-parsing-hook #'org-ref-glossary-before-parsing))
#+end_src
#+RESULTS:
| org-ref-glossary-before-parsing | org-ref-acronyms-before-parsing | org-attach-expand-links |
| org-ref-glossary-before-parsing | org-ref-acronyms-before-parsing | org-attach-expand-links |
#+begin_src emacs-lisp :tangle yes
(after! org (org-add-link-type
"latex" nil
(lambda (path desc format)
(cond
((eq format 'html)
(format "<span class=\"%s\">%s</span>" path desc))
((eq format 'latex)
(format "\\%s{%s}" path desc))))))
#+end_src

32
init.el
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@ -31,21 +31,21 @@
;;deft ; notational velocity for Emacs ;;deft ; notational velocity for Emacs
doom ; what makes DOOM look the way it does doom ; what makes DOOM look the way it does
doom-dashboard ; a nifty splash screen for Emacs doom-dashboard ; a nifty splash screen for Emacs
doom-quit ; DOOM quit-message prompts when you quit Emacs ;;doom-quit ; DOOM quit-message prompts when you quit Emacs
(emoji +unicode) ; 🙂 (emoji +unicode) ; 🙂
hl-todo ; highlight TODO/FIXME/NOTE/DEPRECATED/HACK/REVIEW hl-todo ; highlight TODO/FIXME/NOTE/DEPRECATED/HACK/REVIEW
;;hydra ;;hydra
indent-guides ; highlighted indent columns indent-guides ; highlighted indent columns
ligatures ; ligatures and symbols to make your code pretty again ;;ligatures ; ligatures and symbols to make your code pretty again
;;minimap ; show a map of the code on the side ;;minimap ; show a map of the code on the side
modeline ; snazzy, Atom-inspired modeline, plus API modeline ; snazzy, Atom-inspired modeline, plus API
;;nav-flash ; blink cursor line after big motions ;;nav-flash ; blink cursor line after big motions
;;neotree ; a project drawer, like NERDTree for vim ;;neotree ; a project drawer, like NERDTree for vim
ophints ; highlight the region an operation acts on ophints ; highlight the region an operation acts on
(popup +defaults) ; tame sudden yet inevitable temporary windows (popup +defaults) ; tame sudden yet inevitable temporary windows
tabs ; a tab bar for Emacs ;;tabs ; a tab bar for Emacs
treemacs ; a project drawer, like neotree but cooler treemacs ; a project drawer, like neotree but cooler
;;unicode ; extended unicode support for various languages unicode ; extended unicode support for various languages
(vc-gutter +pretty) ; vcs diff in the fringe (vc-gutter +pretty) ; vcs diff in the fringe
vi-tilde-fringe ; fringe tildes to mark beyond EOB vi-tilde-fringe ; fringe tildes to mark beyond EOB
;;window-select ; visually switch windows ;;window-select ; visually switch windows
@ -68,8 +68,8 @@
:emacs :emacs
dired ; making dired pretty [functional] dired ; making dired pretty [functional]
electric ; smarter, keyword-based electric-indent ;;electric ; smarter, keyword-based electric-indent
ibuffer ; interactive buffer management ;;ibuffer ; interactive buffer management
undo ; persistent, smarter undo for your inevitable mistakes undo ; persistent, smarter undo for your inevitable mistakes
vc ; version-control and Emacs, sitting in a tree vc ; version-control and Emacs, sitting in a tree
@ -82,7 +82,7 @@
:checkers :checkers
syntax ; tasing you for every semicolon you forget syntax ; tasing you for every semicolon you forget
(spell +flyspell) ; tasing you for misspelling mispelling (spell +flyspell) ; tasing you for misspelling mispelling
grammar ; tasing grammar mistake every you make ;;grammar ; tasing grammar mistake every you make
:tools :tools
;;ansible ;;ansible
@ -92,7 +92,7 @@
;;direnv ;;direnv
;;docker ;;docker
editorconfig ; let someone else argue about tabs vs spaces editorconfig ; let someone else argue about tabs vs spaces
ein ; tame Jupyter notebooks with emacs ;;ein ; tame Jupyter notebooks with emacs
(eval +overlay) ; run code, run (also, repls) (eval +overlay) ; run code, run (also, repls)
;;gist ; interacting with github gists ;;gist ; interacting with github gists
lookup ; navigate your code and its documentation lookup ; navigate your code and its documentation
@ -100,7 +100,7 @@
magit ; a git porcelain for Emacs magit ; a git porcelain for Emacs
;;make ; run make tasks from Emacs ;;make ; run make tasks from Emacs
;;pass ; password manager for nerds ;;pass ; password manager for nerds
pdf ; pdf enhancements ;;pdf ; pdf enhancements
;;prodigy ; FIXME managing external services & code builders ;;prodigy ; FIXME managing external services & code builders
rgb ; creating color strings rgb ; creating color strings
;;taskrunner ; taskrunner for all your projects ;;taskrunner ; taskrunner for all your projects
@ -116,7 +116,7 @@
:lang :lang
;;agda ; types of types of types of types... ;;agda ; types of types of types of types...
;;beancount ; mind the GAAP ;;beancount ; mind the GAAP
(cc +lsp) ; C > C++ == 1 cc ; C > C++ == 1
;;clojure ; java with a lisp ;;clojure ; java with a lisp
common-lisp ; if you've seen one lisp, you've seen them all common-lisp ; if you've seen one lisp, you've seen them all
coq ; proofs-as-programs coq ; proofs-as-programs
@ -132,12 +132,12 @@
ess ; emacs speaks statistics ess ; emacs speaks statistics
;;factor ;;factor
;;faust ; dsp, but you get to keep your soul ;;faust ; dsp, but you get to keep your soul
;;fortran ; in FORTRAN, GOD is REAL (unless declared INTEGER) fortran ; in FORTRAN, GOD is REAL (unless declared INTEGER)
;;fsharp ; ML stands for Microsoft's Language ;;fsharp ; ML stands for Microsoft's Language
;;fstar ; (dependent) types and (monadic) effects and Z3 ;;fstar ; (dependent) types and (monadic) effects and Z3
;;gdscript ; the language you waited for ;;gdscript ; the language you waited for
;;(go +lsp) ; the hipster dialect ;;(go +lsp) ; the hipster dialect
;;(graphql +lsp) ; Give queries a REST (graphql +lsp) ; Give queries a REST
(haskell +lsp) ; a language that's lazier than I am (haskell +lsp) ; a language that's lazier than I am
;;hy ; readability of scheme w/ speed of python ;;hy ; readability of scheme w/ speed of python
;;idris ; a language you can depend on ;;idris ; a language you can depend on
@ -145,9 +145,9 @@
(java +lsp) ; the poster child for carpal tunnel syndrome (java +lsp) ; the poster child for carpal tunnel syndrome
javascript ; all(hope(abandon(ye(who(enter(here)))))) javascript ; all(hope(abandon(ye(who(enter(here))))))
julia ; a better, faster MATLAB julia ; a better, faster MATLAB
kotlin ; a better, slicker Java(Script) ;;kotlin ; a better, slicker Java(Script)
latex ; writing papers in Emacs has never been so fun latex ; writing papers in Emacs has never been so fun
lean ; for folks with too much to prove ;;lean ; for folks with too much to prove
;;ledger ; be audit you can be ;;ledger ; be audit you can be
lua ; one-based indices? one-based indices lua ; one-based indices? one-based indices
markdown ; writing docs for people to ignore markdown ; writing docs for people to ignore
@ -156,7 +156,7 @@
(ocaml +lsp) ; an objective camel (ocaml +lsp) ; an objective camel
(org +roam2 +hugo +pandoc +brain) ; organize your plain life in plain text (org +roam2 +hugo +pandoc +brain) ; organize your plain life in plain text
php ; perl's insecure younger brother php ; perl's insecure younger brother
;;plantuml ; diagrams for confusing people more plantuml ; diagrams for confusing people more
;;purescript ; javascript, but functional ;;purescript ; javascript, but functional
python ; beautiful is better than ugly python ; beautiful is better than ugly
;;qt ; the 'cutest' gui framework ever ;;qt ; the 'cutest' gui framework ever
@ -164,7 +164,7 @@
raku ; the artist formerly known as perl6 raku ; the artist formerly known as perl6
;;rest ; Emacs as a REST client ;;rest ; Emacs as a REST client
rst ; ReST in peace rst ; ReST in peace
;;(ruby +rails) ; 1.step {|i| p "Ruby is #{i.even? ? 'love' : 'life'}"} (ruby +rails) ; 1.step {|i| p "Ruby is #{i.even? ? 'love' : 'life'}"}
(rust +lsp) ; Fe2O3.unwrap().unwrap().unwrap().unwrap() (rust +lsp) ; Fe2O3.unwrap().unwrap().unwrap().unwrap()
scala ; java, but good scala ; java, but good
(scheme +guile) ; a fully conniving family of lisps (scheme +guile) ; a fully conniving family of lisps

14
packages.el
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@ -48,20 +48,24 @@
;(unpin! pinned-package another-pinned-package) ;(unpin! pinned-package another-pinned-package)
;; ...Or *all* packages (NOT RECOMMENDED; will likely break things) ;; ...Or *all* packages (NOT RECOMMENDED; will likely break things)
;(unpin! t) ;(unpin! t)
; (package! conda) ; (package! conda)
(package! quarto-mode) (package! quarto-mode)
(package! org-elp) ;; (package! org-elp)
(package! pasp-mode) (package! pasp-mode)
(package! ob-pasp (package! ob-pasp
:recipe (:host github :repo "UncleSamulus/ob-pasp")) :recipe (:host github :repo "samuelortion/ob-pasp"))
(package! ox-hugo) ;; (package! ox-hugo)
(package! groovy-mode) (package! groovy-mode)
(package! nextflow-mode :recipe (:host github :repo "emiller88/nextflow-mode")) (package! nextflow-mode :recipe (:host github :repo "emiller88/nextflow-mode"))
;; typst
;;(package! typst-ts-mode :recipe
;; (:host sourcehut :repo "meow_king/typst-ts-mode"))
(package! org-ref)