study-docker-repro-longevity/artifacts/nickel/template.ncl

{
  version = "1.0",
  artifact_url = "https://example.com/artifact.zip",
  type = "zip",
  doi = "...",
  comment = "Template for artifact configuration.",
  virtualization = "docker",
  buildfile_dir = "path/to/docker/folder",
  package_managers = [ "dpkg", "rpm", "pacman", "pip", "conda" ],
  git_packages = [
    { name = "pkg1", location = "path/to/git/repo" }
  ],
  misc_packages = [
    { name = "mpkg1", url = "http://example.com/package.zip" }
  ],
  python_venvs = [
    { path = "path/to/venv" }
  ]
}
Add POC for using nickel as a configuration lang The `check.ncl` file contains the commands what we could use directly from snakemake to validate the configs and generate the json/yaml for ecg 2024-07-11 16:05:08 +02:00			`{`
Added version number to the Nickel contracts and artifacts (close #27). 2024-07-29 16:37:44 +02:00			`version = "1.0",`
Fixed Nickel config files. Added artifact hash log on Snakefile + modified some variables names. Switched from 'tgz' to 'tar' for archive type. 2024-07-16 16:47:17 +02:00			`artifact_url = "https://example.com/artifact.zip",`
Added a comment section for artifacts configuration. Moved hints to the Nickel contract. 2024-07-19 17:05:46 +02:00			`type = "zip",`
Add POC for using nickel as a configuration lang The `check.ncl` file contains the commands what we could use directly from snakemake to validate the configs and generate the json/yaml for ecg 2024-07-11 16:05:08 +02:00			`doi = "...",`
Added a comment section for artifacts configuration. Moved hints to the Nickel contract. 2024-07-19 17:05:46 +02:00			`comment = "Template for artifact configuration.",`
Added support for other virtualization techs in the Nickel contract (close #28). Added Nix dependency for Snakemake diagram generation. 2024-07-30 18:06:16 +02:00			`virtualization = "docker",`
			`buildfile_dir = "path/to/docker/folder",`
Switching from pip freeze to pip list because of inconsistent output mentionned in #18, close #22. Adding albab_k9db config. 2024-07-24 11:34:05 +02:00			`package_managers = [ "dpkg", "rpm", "pacman", "pip", "conda" ],`
Add POC for using nickel as a configuration lang The `check.ncl` file contains the commands what we could use directly from snakemake to validate the configs and generate the json/yaml for ecg 2024-07-11 16:05:08 +02:00			`git_packages = [`
Almost solved the removing of bash login messages from outputs (#18) but still needs some work ("dace" pip package incorrectly displayed for deinsum). 2024-07-23 21:04:34 +02:00			`{ name = "pkg1", location = "path/to/git/repo" }`
Add POC for using nickel as a configuration lang The `check.ncl` file contains the commands what we could use directly from snakemake to validate the configs and generate the json/yaml for ecg 2024-07-11 16:05:08 +02:00			`],`
			`misc_packages = [`
Removed the "type" attribute in the misc_package description. 2024-07-19 15:28:58 +02:00			`{ name = "mpkg1", url = "http://example.com/package.zip" }`
Added initial support for Python venvs, close #21. Disabled the Docker build cache by default, and added an option to reenable it, close #23. Removed conditions on the existance of git_packages and misc_packages, because the workflow enforces their existance with the Nickel artifact contract. 2024-07-24 18:05:31 +02:00			`],`
			`python_venvs = [`
			`{ path = "path/to/venv" }`
Added Nickel constraint on values. 2024-07-17 14:56:38 +02:00			`]`
move artifacts_nickel and artifacts_json to artifacts/nickel and artifacts/json 2024-07-19 16:38:18 +02:00			`}`