GuilloteauQ/study-docker-repro-longevity
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Comments on Snakemake config files.

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antux18 2024-08-20 18:59:31 +02:00
parent 9c6fe6700b
commit 52c629b9b8
2 changed files with 5 additions and 6 deletions
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9
config/config.yaml
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@ -1,14 +1,13 @@
folder_artifacts_nickel: "artifacts/nickel" folder_artifacts_nickel: "artifacts/nickel"
folder_artifacts_json: "artifacts/json" folder_artifacts_json: "artifacts/json"
folder_blacklists: "blacklists" folder_blacklists: "blacklists"
system: "local" # can be "local" for local execution system: "local"
prefix: "outputs" prefix: "outputs"
analysis_dir: "outputs/analysis" analysis_dir: "outputs/analysis"
site: "grenoble" site: "grenoble"
cluster: "dahu" cluster: "dahu"
max_duration: 60 # 1 hour max_duration: 60
checkpoint: 1 # 1 minute checkpoint: 1
besteffort: True besteffort: True
#sleep_time: 300 # 5 minutes sleep_time: 30
sleep_time: 30 # 0.5 minutes

2
config/default_config.yaml
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@ -1,7 +1,7 @@
folder_artifacts_nickel: "artifacts/nickel" folder_artifacts_nickel: "artifacts/nickel"
folder_artifacts_json: "artifacts/json" folder_artifacts_json: "artifacts/json"
folder_blacklists: "blacklists" folder_blacklists: "blacklists"
system: "g5k" # can be "local" for local execution system: "g5k" # can be "g5k" to run on the Grid'5000 testbed, or "local" for local execution
prefix: "outputs" prefix: "outputs"
analysis_dir: "outputs/analysis" analysis_dir: "outputs/analysis"