GuilloteauQ/study-docker-repro-longevity
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Integrated the whole analysis part to the Snakefile, but needs testing (#44).

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antux18 2024-08-19 15:21:28 +02:00
parent e943be4efe
commit f6f20cb0d6
1 changed files with 8 additions and 15 deletions
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23
workflow/Snakefile
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@ -82,6 +82,13 @@ rule update_blacklist:
# We need to ignore lines where build is successful: # We need to ignore lines where build is successful:
f"cat {{input}} | grep -v ',success' > {{output}} && rm -rf {BLACKLIST} && ln -s {{output}} {BLACKLIST}" f"cat {{input}} | grep -v ',success' > {{output}} && rm -rf {BLACKLIST} && ln -s {{output}} {BLACKLIST}"
ANALYSIS_SCRIPTS = {
"sources_stats": f"python3 {ANALYSIS_DIR}/softenv_analysis.py -t sources-stats",
"pkgs_changes": f"python3 {ANALYSIS_DIR}/softenv_analysis.py -t pkgs-changes",
"build_status": f"python3 {ANALYSIS_DIR}/buildstatus_analysis.py",
"artifact": f"python3 {ANALYSIS_DIR}/artifact_analysis.py"
}
rule all_analysis: rule all_analysis:
input: input:
expand(f"{PREFIX}/{{folder}}/{{artifact}}/{{date}}.csv",\ expand(f"{PREFIX}/{{folder}}/{{artifact}}/{{date}}.csv",\
@ -95,19 +102,5 @@ rule all_analysis:
artifact=ARTIFACTS,\ artifact=ARTIFACTS,\
date=DATE date=DATE
), ),
rule softenv_analysis:
input:
expand(f"{PREFIX}/pkgs/{{artifact}}/{{date}}.csv",
artifact=ARTIFACTS,\
date=DATE
),
output:
expand(f"{ANALYSIS_DIR}/pkgs_changes/{{artifact}}/{{date}}.csv",\
artifact=ARTIFACTS,\
date=DATE
),
shell: shell:
expand(f"python3 {ANALYSIS_DIR}/softenv_analysis.py -t {{analysis_type}} -i {{{{input}}}} -o {{{{output}}}}",\ f"{{{{ANALYSIS_SCRIPTS[wildcards.folder]}}}} -i {{input}} -o {{output}}"
analysis_type = ["sources-stats", "pkgs-changes"]
)