1d925ca364
Now using the name of the config file (without ext) as image name, meaning the name of the config file should comply with Docker image naming rules (should be the case).
2024-07-25 09:27:30 +02:00
48d3da9c7d
Removed image name from the config file, now generated from the artifact URL ( close #24 ). Fixed the "--no-cache" option when using Docker cache.
2024-07-24 18:58:50 +02:00
d2768d5373
Added initial support for Python venvs, close #21 . Disabled the Docker build cache by default, and added an option to reenable it, close #23 . Removed conditions on the existance of git_packages and misc_packages, because the workflow enforces their existance with the Nickel artifact contract.
2024-07-24 18:05:31 +02:00
8687bb03f4
Switching from pip freeze to pip list because of inconsistent output mentionned in #18 , close #22 . Adding albab_k9db config.
2024-07-24 11:34:05 +02:00
cc50349cf5
Almost solved the removing of bash login messages from outputs ( #18 ) but still needs some work ("dace" pip package incorrectly displayed for deinsum).
2024-07-23 21:04:34 +02:00
5ba63ad50e
Fixed merge.
2024-07-23 17:27:10 +02:00
687b777912
Merge remote-tracking branch 'origin/workflow_config'
2024-07-23 17:26:03 +02:00
557f766a02
Removing global variables, closing #19 .
2024-07-23 09:38:03 +02:00
Quentin Guilloteau
944b1bf6f9
checkpoint in case of reaching walltime
2024-07-21 17:32:04 +02:00
Quentin Guilloteau
dd6eb9bcbb
now using tmp dir to decompress the artifact
2024-07-21 16:11:55 +02:00
57ff34e8b9
Written Nickel + JSON artifact config files from their YAML version. Handling unknown errors during image building.
2024-07-18 17:56:57 +02:00
75056727e5
Fixing quotes for formatted strings.
2024-07-16 17:53:34 +02:00
f2cfceffb0
When no cache dir is specified, cache is disabled.
2024-07-16 17:50:55 +02:00
1aaa77cba3
Fixed Nickel contract and check files. Fixed input/output files in Snakefile.
2024-07-16 17:35:09 +02:00
69e447ab0a
Fixed Nickel config files. Added artifact hash log on Snakefile + modified some variables names. Switched from 'tgz' to 'tar' for archive type.
2024-07-16 16:47:17 +02:00
82af4bd521
Written a doc. Changing the name of the variables related to the hash log.
2024-07-16 15:34:15 +02:00
f068fb91d0
Added artifact hash logging, closing #3 .
2024-07-16 12:04:29 +02:00
0841823096
Switched from YAML to JSON, closing #8 .
2024-07-16 11:01:08 +02:00
9a01db7faf
Now using f-strings, closing #6 . Made path-related cmd args required, closing #7 . Used variables in check_env for readability, closing #5 .
2024-07-16 10:20:04 +02:00
da114662ba
Added stdout to output. Fixed log. Opening build_status file in append mode. Added verbose flag to run script.
2024-07-15 11:28:38 +02:00
0e6b181310
Continued work on buildstatus_saver. Removed headers for CSV files, closing #4 .
2024-07-15 11:00:08 +02:00
2ad37f46f2
Initial support for Docker errors parsing.
2024-07-12 17:50:19 +02:00
23c4f7ede4
Added support for cache. Added run and clean scripts.
2024-07-12 12:10:03 +02:00
27d0331c06
Added logging to a file.
2024-07-12 11:21:14 +02:00
2f779d0ab0
- Config files now contain 1 Dockerfile only.
...
- Removed support for running ECG with multiple config files at the same time: will be called with a single one only
- Removed storage management of outputs, paths are now given using command line args.
- Started working on cache support.
2024-07-11 17:14:58 +02:00
30a82efc70
Adding support for multiple config files. Improving structure of output files.
2024-07-10 19:01:46 +02:00
7dfe12ed80
Added support for packages outside of pkgmgr and git.
2024-07-10 17:06:54 +02:00
03c6602db3
Now running the output formatting commands locally, and not on the container.
2024-07-10 15:44:01 +02:00
a18bed49b1
Added support for Git packages.
2024-07-10 14:50:57 +02:00
6a6ae9370d
Adding comments + doc. Starting the work on git packages.
2024-07-10 12:23:07 +02:00
ba1303aa97
Taking conda into account.
2024-07-10 11:40:49 +02:00
bf6ebc8ab6
Merging all package lists into a single one.
2024-07-10 10:35:30 +02:00
3d695c1ead
Added support for RPM and Pacman.
2024-07-09 18:45:25 +02:00
561748ed59
Initial code.
2024-07-09 18:25:21 +02:00
