Commit Graph

44 Commits

Author SHA1 Message Date
4b91a6cb5d Modified analysis according to the fact that logs for multiple executions of ECG will not be appended to the same file, rather written to a new file every time. Added a column for the artifact name in the artifact hash log for that reason. Updated README. Added sed as dependency for Nix. Started writing package changes analysis. 2024-08-07 11:22:54 +02:00
eae7c40d59 Added timestamp to every row in package list (close #38). 2024-08-06 16:59:36 +02:00
ac6c100c6b Fixed venv pkglist (close #21). 2024-08-05 18:22:38 +02:00
cd9a9000d5 Adding a column with the name of the artifact in each row of the package list (close #37). 2024-08-05 17:04:42 +02:00
ea6d78dac2 Switched from an empty hash to indicate download failure to a hash equal to "-1". Fixed a bug where the cache folder would not be removed in case artifact download failed. 2024-08-05 16:29:07 +02:00
114d0e5816 Added support for other virtualization techs in the Nickel contract (close #28). Added Nix dependency for Snakemake diagram generation. 2024-07-30 18:06:16 +02:00
14ca1da160 Now handling the script's own crashes: saving to log and build status file (close #25). 2024-07-29 15:17:22 +02:00
e8b25b74a7 Added build status analysis. Now logging build status even if build is successful, to make analysis easier (as mentionned in #26). Added a new error type. 2024-07-26 19:00:25 +02:00
f25f5e356d Handling the case where artifact/misc packages cannot be downloaded. 2024-07-26 13:28:26 +02:00
3c648c1a09 Written skeleton for output analysis (#26). Renamed some arguments of ECG. 2024-07-25 18:03:14 +02:00
1d925ca364 Now using the name of the config file (without ext) as image name, meaning the name of the config file should comply with Docker image naming rules (should be the case). 2024-07-25 09:27:30 +02:00
48d3da9c7d Removed image name from the config file, now generated from the artifact URL (close #24). Fixed the "--no-cache" option when using Docker cache. 2024-07-24 18:58:50 +02:00
d2768d5373 Added initial support for Python venvs, close #21. Disabled the Docker build cache by default, and added an option to reenable it, close #23. Removed conditions on the existance of git_packages and misc_packages, because the workflow enforces their existance with the Nickel artifact contract. 2024-07-24 18:05:31 +02:00
8687bb03f4 Switching from pip freeze to pip list because of inconsistent output mentionned in #18, close #22. Adding albab_k9db config. 2024-07-24 11:34:05 +02:00
cc50349cf5 Almost solved the removing of bash login messages from outputs (#18) but still needs some work ("dace" pip package incorrectly displayed for deinsum). 2024-07-23 21:04:34 +02:00
5ba63ad50e Fixed merge. 2024-07-23 17:27:10 +02:00
687b777912 Merge remote-tracking branch 'origin/workflow_config' 2024-07-23 17:26:03 +02:00
557f766a02 Removing global variables, closing #19. 2024-07-23 09:38:03 +02:00
Quentin Guilloteau
944b1bf6f9 checkpoint in case of reaching walltime 2024-07-21 17:32:04 +02:00
Quentin Guilloteau
dd6eb9bcbb now using tmp dir to decompress the artifact 2024-07-21 16:11:55 +02:00
57ff34e8b9 Written Nickel + JSON artifact config files from their YAML version. Handling unknown errors during image building. 2024-07-18 17:56:57 +02:00
75056727e5 Fixing quotes for formatted strings. 2024-07-16 17:53:34 +02:00
f2cfceffb0 When no cache dir is specified, cache is disabled. 2024-07-16 17:50:55 +02:00
1aaa77cba3 Fixed Nickel contract and check files. Fixed input/output files in Snakefile. 2024-07-16 17:35:09 +02:00
69e447ab0a Fixed Nickel config files. Added artifact hash log on Snakefile + modified some variables names. Switched from 'tgz' to 'tar' for archive type. 2024-07-16 16:47:17 +02:00
82af4bd521 Written a doc. Changing the name of the variables related to the hash log. 2024-07-16 15:34:15 +02:00
f068fb91d0 Added artifact hash logging, closing #3. 2024-07-16 12:04:29 +02:00
0841823096 Switched from YAML to JSON, closing #8. 2024-07-16 11:01:08 +02:00
9a01db7faf Now using f-strings, closing #6. Made path-related cmd args required, closing #7. Used variables in check_env for readability, closing #5. 2024-07-16 10:20:04 +02:00
da114662ba Added stdout to output. Fixed log. Opening build_status file in append mode. Added verbose flag to run script. 2024-07-15 11:28:38 +02:00
0e6b181310 Continued work on buildstatus_saver. Removed headers for CSV files, closing #4. 2024-07-15 11:00:08 +02:00
2ad37f46f2 Initial support for Docker errors parsing. 2024-07-12 17:50:19 +02:00
23c4f7ede4 Added support for cache. Added run and clean scripts. 2024-07-12 12:10:03 +02:00
27d0331c06 Added logging to a file. 2024-07-12 11:21:14 +02:00
2f779d0ab0 - Config files now contain 1 Dockerfile only.
- Removed support for running ECG with multiple config files at the same time: will be called with a single one only
- Removed storage management of outputs, paths are now given using command line args.
- Started working on cache support.
2024-07-11 17:14:58 +02:00
30a82efc70 Adding support for multiple config files. Improving structure of output files. 2024-07-10 19:01:46 +02:00
7dfe12ed80 Added support for packages outside of pkgmgr and git. 2024-07-10 17:06:54 +02:00
03c6602db3 Now running the output formatting commands locally, and not on the container. 2024-07-10 15:44:01 +02:00
a18bed49b1 Added support for Git packages. 2024-07-10 14:50:57 +02:00
6a6ae9370d Adding comments + doc. Starting the work on git packages. 2024-07-10 12:23:07 +02:00
ba1303aa97 Taking conda into account. 2024-07-10 11:40:49 +02:00
bf6ebc8ab6 Merging all package lists into a single one. 2024-07-10 10:35:30 +02:00
3d695c1ead Added support for RPM and Pacman. 2024-07-09 18:45:25 +02:00
561748ed59 Initial code. 2024-07-09 18:25:21 +02:00