Quentin Guilloteau
ce977ceb9e
now working on g5k
2024-08-29 18:16:12 +02:00
Quentin Guilloteau
a62d338bd0
moving some config around
2024-08-29 12:58:50 +02:00
97447e59a1
The results of the get_analysis_dates function being used as inputs in some Snakemake rules, this causes Snakemake to overwrite older analysis, probably because the files used to generate these older analysis have been modified. To avoid overwriting older analysis, we only specify today's analysis in the input, and use a bash wrapper script to both fetch the older analysis by itself (by giving it the folder where to look), and run the analysis with the fetched files. So I removed get_analysis_dates and replaced it with the wrapper script every time it was used.
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I also removed the older unfinished analysis wrapper that I forgot it existed...
2024-08-23 16:14:46 +02:00
f2cf7e3498
Handling of the case where no artifact configuration files have been found, or they have all been blacklisted.
2024-08-22 18:37:44 +02:00
b8212061fd
The date of the day is now always added to the output of get_analysis_dates, because we obviously want to generate the analysis of the day, even if there are older analysis in the folder already...
2024-08-22 18:21:00 +02:00
ce826c35a6
Fixed aggregation by separating it into multiple rules. Fixed calls to get_analysis_dates. Fixed plot headers and plot script in plotting rules, which are now working ( close #44 ). Rule all has been modified according to these changes. Removed global analysis rule.
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List of artifacts to build now generated using all available blacklists, not just the last one (ensures that we don't miss some blacklisted artifacts). Fixed update blacklist rule, because of grep's output. Removed default blacklist.
2024-08-22 17:55:05 +02:00
2d5b043f8f
Fixed analysis and aggregate rules to get all ECG/analysis outputs for all possible dates. Written a function to get all available outputs for this purpose. Defined variables for arrays used multiple times. Simplified aggregate rule, but needs fix, because cannot have a list of shell commands apparently. Modified plotting rules according to those changes.
2024-08-21 21:15:09 +02:00
9c6fe6700b
The updating of the blacklist has been reworked to be functional: it is not relying on a symlink anymore (this symlink has been removed). Instead, the last blacklist is fetched by the get_artifacts_to_build function. Modified Snakefile according to the change in the name of a build status. Created a default config file for Snakemake, allowing custom configurations to be written to "config.yaml".
2024-08-20 18:55:12 +02:00
Quentin Guilloteau
28126f8b3e
basic workflow for ecg
2024-07-11 15:17:16 +02:00
