integrate nickel in workflow #11

Merged
antux18 merged 1 commits from nickel_workflow into main 2024-07-16 15:37:14 +02:00
2 changed files with 19 additions and 4 deletions

View File

@ -3,12 +3,13 @@ include: "utils.smk"
import datetime
DATE = datetime.datetime.now().strftime("%Y%m%d")
ARTIFACTS_FOLDER = "artifacts"
ARTIFACTS_FOLDER_NICKEL = "artifacts_nickel"
ARTIFACTS_FOLDER_JSON = "artifacts_json"
BLACKLIST_FOLDER = "blacklists"
BLACKLIST = "blacklist.csv"
EXTENSION = "yaml"
EXTENSION = "json"
ARTIFACTS = get_artifacts_to_build(ARTIFACTS_FOLDER, BLACKLIST)
ARTIFACTS = get_artifacts_to_build(ARTIFACTS_FOLDER_NICKEL, BLACKLIST)
rule all:
input:
@ -18,17 +19,31 @@ rule all:
date=DATE),
f"{BLACKLIST_FOLDER}/{DATE}.csv"
rule check_artifact:
input:
"flake.nix",
"flake.lock",
contract="workflow/nickel/artifact_contract.ncl",
artifact=f"{ARTIFACTS_FOLDER_NICKEL}/{{artifact}}.ncl"
output:
f"{ARTIFACTS_FOLDER_JSON}/{{artifact}}.json"
shell:
"""
nickel export --format json --output {output} <<< 'let {{Artifact, ..}} = import "{input.contract}" in ((import "{input.artifact}") | Artifact)'
"""
rule run_ecg:
input:
"flake.nix",
"flake.lock",
ecg="ecg.py",
artifact=f"{ARTIFACTS_FOLDER_JSON}/{{artifact}}.{EXTENSION}"
output:
log = "logs/{artifact}/{date}.csv",
pkg = "pkgs/{artifact}/{date}.csv",
status = "status/{artifact}/{date}.csv",
shell:
f"python3 {{input.ecg}} --log {{output.log}} --pkg {{output.pkg}} --status {{output.pkg}} {ARTIFACTS_FOLDER}/{{wildcards.artifact}}.{EXTENSION}"
f"python3 {{input.ecg}} --log {{output.log}} --pkg {{output.pkg}} --status {{output.pkg}} {ARTIFACTS_FOLDER_JSON}/{{wildcards.artifact}}.{EXTENSION}"
rule update_blacklist:
input: