integrate nickel in workflow #11
@ -3,12 +3,13 @@ include: "utils.smk"
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import datetime
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DATE = datetime.datetime.now().strftime("%Y%m%d")
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ARTIFACTS_FOLDER = "artifacts"
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ARTIFACTS_FOLDER_NICKEL = "artifacts_nickel"
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ARTIFACTS_FOLDER_JSON = "artifacts_json"
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BLACKLIST_FOLDER = "blacklists"
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BLACKLIST = "blacklist.csv"
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EXTENSION = "yaml"
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EXTENSION = "json"
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ARTIFACTS = get_artifacts_to_build(ARTIFACTS_FOLDER, BLACKLIST)
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ARTIFACTS = get_artifacts_to_build(ARTIFACTS_FOLDER_NICKEL, BLACKLIST)
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rule all:
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input:
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@ -18,17 +19,31 @@ rule all:
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date=DATE),
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f"{BLACKLIST_FOLDER}/{DATE}.csv"
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rule check_artifact:
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input:
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"flake.nix",
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"flake.lock",
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contract="workflow/nickel/artifact_contract.ncl",
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artifact=f"{ARTIFACTS_FOLDER_NICKEL}/{{artifact}}.ncl"
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output:
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f"{ARTIFACTS_FOLDER_JSON}/{{artifact}}.json"
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shell:
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"""
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nickel export --format json --output {output} <<< 'let {{Artifact, ..}} = import "{input.contract}" in ((import "{input.artifact}") | Artifact)'
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"""
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rule run_ecg:
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input:
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"flake.nix",
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"flake.lock",
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ecg="ecg.py",
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artifact=f"{ARTIFACTS_FOLDER_JSON}/{{artifact}}.{EXTENSION}"
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output:
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log = "logs/{artifact}/{date}.csv",
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pkg = "pkgs/{artifact}/{date}.csv",
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status = "status/{artifact}/{date}.csv",
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shell:
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f"python3 {{input.ecg}} --log {{output.log}} --pkg {{output.pkg}} --status {{output.pkg}} {ARTIFACTS_FOLDER}/{{wildcards.artifact}}.{EXTENSION}"
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f"python3 {{input.ecg}} --log {{output.log}} --pkg {{output.pkg}} --status {{output.pkg}} {ARTIFACTS_FOLDER_JSON}/{{wildcards.artifact}}.{EXTENSION}"
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rule update_blacklist:
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input:
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