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refactor repository and update cv-en for SaclAI MixtAI

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.venv *.log
*.aux
*.bbl
*.blg
*.out
*.toc
*.fls
*.fdb_latexmk
*~
_minted-main
_minted-preamble
*.synctex.gz
*.old
.auctex-auto/

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%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
% MyOwnCV - English version
%
% Author: Samuel Ortion
%
% 2022-2023
% Some right reserved
%
% Version v0.0.9 (2024-03-07)
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
\documentclass[15pt]{mycv}
\usepackage{datenumber}
\usepackage{fp}
\usepackage{csquotes}
\usepackage{luatextra}
\hypersetup{%
pdfauthor={Samuel Ortion},%
pdftitle={CV - Samuel Ortion},%
pdfsubject={CV},%
pdfkeywords={Computer Science, Biology}%
}
\def\todayISO{\the\year-\ifnum\month<10\relax0\fi\the\month-\ifnum\day<10\relax0\fi\the\day}
\begin{document}
\PrintableMode % Make the CV printable
% How old am I at compilation time ?
\newcounter{dateone}%
\newcounter{datetwo}%
\setmydatenumber{dateone}{2003}{01}{21}%
\setmydatenumber{datetwo}{\the\year}{\the\month}{\the\day}%
\FPsub\result{\thedatetwo}{\thedateone}
\FPdiv\myage{\result}{365.2425}
\FPtrunc\myage{\myage}{0}
%
% TOP BAR
%
\begin{TopBar}{\ColorTextSide}
\vspace{2cm}
\Name{\ColorHighlight}{\textbf{Samuel ORTION}}{Compational biology student}{\myage\ years old}
\vspace{1cm}
\begin{center}
\Large Application to MixtAI Scholarship, Paris-Saclay
\end{center}
%%% Contact
\end{TopBar}
%
% SIDE BAR
%
\begin{SideBar}{\ColorBackground}{\ColorTextSide}
\TextSeparatorBis{\ColorHighlight}{\faHome}{Contact}
\begin{ItemList}{\ColorHighlight}
\item [\faAt]\href{mailto:samuel@ortion.fr}{samuel@ortion.fr}
\item [\faMobile]+33 (0) 6 21 58 03 48
\item [\faMapMarker] Appt. B020 Estudines le Parc \\
61 Bd.\ de L'Yerres \\
91000 Évry - Courcouronnes
\end{ItemList}
\vspace*{1em}
\TextSeparatorBis{\ColorHighlight} {\faLink}{Links}
\begin{ItemList}{\ColorHighlight}
\item [\Large\faGlobe] \href{https://samuel.ortion.fr/}{samuel.ortion.fr}
\item [\Large\faGitlab] \href{https://framagit.org/sortion/}{framagit.org/sortion}
\item [\hspace{0.25em}${\includegraphics[height=15pt]{./img/icons/rosalind_logo_green.png}}$\hspace{0.25em}] \href{https://rosalind.info/users/Samulus.i.n/}{Samulus.i.n on Rosalind.info}
\end{ItemList}
\vspace{1cm}
%%% Hard skills
\TextSeparatorBis{\ColorHighlight}{\faHammer}{Skills}
\begin{ItemList}{\ColorHighlight}
\item [\faCode] C/C++, Rust, Python, R, shell \\
JS, Java, PHP, OCaml\ldots
\item [\faFileCode] HTML, CSS, \LuaLaTeX
\item [\faDatabase] SQL
\item [\faLinux] GNU/Linux, Docker, Slurm
\item [\faGit*] Git
\item [{$\includegraphics[height=15pt]{./img/icons/UML-green.png}$}] UML2
\iffalse
\item [\faFlask] Basic Laboratory Technics
\begin{ItemList}{\ColorHighlight}
\item [\faDna] PCR, RT-PCR, Cloning
\item [{$\includegraphics[height=15pt]{./img/icons/spectro-green.png}$}] Spectrophotometry
\item [{$\includegraphics[height=15pt]{./img/icons/bacille-green.png}$}] Microorganism culture
\item [{$\includegraphics[height=15pt]{./img/icons/microscope-green.png}$}] Microscopy
\item [{$\includegraphics[height=15pt]{./img/icons/electrophorese-green}$}] Electrophoresis
\end{ItemList}
\fi
\end{ItemList}
\vspace{1cm}
%%% Languages
\TextSeparatorBis{\ColorHighlight}{\faLanguage}{Languages}
\begin{ItemList}{\ColorHighlight}
\item [] French (native)
\item [] English (B2, TOEIC Score 870)
\item [] German (A2)
\end{ItemList}
\vspace{2cm}
\texttt{\color{gray}updated on \todayISO}
\end{SideBar}
%
% Picture
%
\DefineProfile{\ColorOther}{\ColorTextSide}{./img/portrait_sortion_pj-crop.jpeg}
%
% Main
%
\begin{MainPart}
%%% Education
\MainTitleBis{\ColorHighlight}{\ColorTextMain}{Education}{\faGraduationCap}
\Experience
{\ColorHighlight}
{Master Genomics, Informatics and Mathematics for Health and Environment}
{Université d'Évry val d'Essonne -- Université Paris-Saclay}
{2023-present}
{
\begin{ItemList}{\ColorHighlight}
\item [] Participation to the Digital for Genomics Hackathon 2024 (Genopole): \href{https://github.com/sebgra/intelligent_antibodies/}{\textit{intelligent antibodies}} team.
\end{ItemList}
}
%\vspace{0.5cm}
\Experience
{\ColorHighlight}
{\href{https://www.universite-paris-saclay.fr/formation/licence-double-diplome/informatique-sciences-de-la-vie/}
{Bachelor's Degree in Computer Science and Biology}
}
{Université d'Évry val d'Essonne -- Université Paris-Saclay}
{ \hfill 2020-2023}
{
\begin{ItemList}{\ColorHighlight}
\item [] Participation to the Digital for Genomics Hackathon 2023 at Évry Genopole with the \textit{DeepContact} team (Institut Pasteur).
\item [] Member of the iGEM 2023 Évry -- Paris-Saclay team.
\end{ItemList}
}
\vspace{0.25cm}
%%% Experiences
\MainTitleBis{\ColorHighlight}{\ColorTextMain}{Experience}{\faSuitcase}
\Experience
{\ColorHighlight}
{Bioinformatics Internship}
{Laboratoire de mathématiques et modélisation d'Évry -- statistique et génome}
{April-July 2024}
{
\begin{ItemList}{\ColorHighlight}
\item [] Contribution to FTAG-Finder, a pipeline to detect gene families and tandemly arrayed genes from a single species' proteome
\end{ItemList}
}
\Experience
{\ColorHighlight}
{Bioinformatics Internship}
{Institut Pasteur - Spatial Regulation of Genomes}
{July-August 2023}
{
\begin{ItemList}{\ColorHighlight}
\item [] An attempt to avoid too heavy
Hi-C reads mapping on genomes with numerous repeated sequences with an heuristics\iffalse, with an approximation based on previously annotated repeats positions\fi.
\end{ItemList}
}
\Experience
{\ColorHighlight}
{Neuroscience Internship}
{Lyon Neuroscience Research Center -- Olfaction: from Coding to Memory}
{May-July 2023}
{
\begin{ItemList}{\ColorHighlight}
\item [] Electrophysiological signal analysis in rats (LFP and respiration)\iffalse (signal processing with Python libraries)\fi.
\end{ItemList}
}
\iffalse
\Experience
{\ColorHighlight}
{Computer Science Internship ()}
{\href{https://www.natural-solutions.eu/}{Natural-Solutions}}
{January 2022}
{
\begin{ItemList}{\ColorHighlight}
\item [] Contribution to a deep learning project aiming at automatic detection and identification of nocturnal bird flight calls: \href{https://nocturnal-bird-migration.com/}{NBM Challenge}.
\end{ItemList}
}
\fi
\vspace{0.25cm}
%%% Activities
\MainTitleBis{\ColorHighlight}{\ColorTextMain}{Activities}{\faUsers}
\vspace{0.5cm}
\begin{DoubleColumns}
\begin{ItemList}{\ColorHighlight}
\item [] Bird watching \& Bat recording (Vigie-Chiro)
\item [] \href{https://jebif.fr/}{JeBiF} (member of the administration committee)
\end{ItemList}
\nextcolumn
\begin{ItemList}{\ColorHighlight}
\item [] Software development
\item [] \href{https://liness.org/}{Liness Linux User Group}
\item [] \href{https://bioinfo-fr.net/author/samuel-ortion}{bioinfo-fr.net} blog
\end{ItemList}
\end{DoubleColumns}
\end{MainPart}
\end{document}

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%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
% MyOwnCV - French version % MyOwnCV - French version
% %
% @author Samuel ORTION % Author: Samuel ORTION
% %
% 🄯 2022-2023 % 🄯 2022-2023
% Some right reserved % Some right reserved
% %
% @version v0.0.6 (2023-07-29) % @version v0.0.8 (2024-03-18)
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
\documentclass[11pt]{mycv} \documentclass[11pt]{mycv}
@ -85,34 +85,34 @@
%%% Goal %%% Goal
\begin{center} \begin{center}
\Large \Large
\textbf{\textit{Stage à l'Institut Pasteur}} \\ \textbf{\textit{Candidature PhD-Track}} \\
\end{center} \end{center}
\vspace{1cm} \vspace{1cm}
\TextSeparatorBis{\ColorHighlight} {\faLink}{Liens} \TextSeparatorBis{\ColorHighlight} {\faLink}{Liens}
\begin{ItemList}{\ColorHighlight} \begin{ItemList}{\ColorHighlight}
\item [\Large\faGlobe] \:\href{https://samuel.ortion.fr/}{samuel.ortion.fr} \item [\Large\faGlobe] \:\href{https://samuel.ortion.fr/}{samuel.ortion.fr}
\item [\Large\faGit] \href{https://framagit.org/sortion}{sortion} (\href{https://forge.chapril.org/sortion/}{\includegraphics[height=7pt]{../img/icons/Gitea_Logo.png}}, \href{https://framagit.org/sortion}{\faGitlab}, \href{https://github.com/UncleSamulus}{\faGithub}) \item [\Large\faGit] \href{https://framagit.org/sortion}{sortion} (\href{https://forge.chapril.org/sortion/}{\includegraphics[height=7pt]{./img/icons/Gitea_Logo.png}}, \href{https://framagit.org/sortion}{\faGitlab}, \href{https://github.com/UncleSamulus}{\faGithub})
\end{ItemList} \end{ItemList}
\vspace{1cm} \vspace{1cm}
%%% Hard skills %%% Hard skills
\TextSeparatorBis{\ColorHighlight}{\faGears}{Compétences} \TextSeparatorBis{\ColorHighlight}{}{Compétences}
\begin{ItemList}{\ColorHighlight} \begin{ItemList}{\ColorHighlight}
\item [\faCode] C/C++, Rust, Python, R, JS, Java, SHELL, PHP, OCaml\ldots \item [\faCode] C/C++, Rust, Python, R, JS, Java, SHELL, PHP, OCaml\ldots
\item [\faFileCodeO] HTML, CSS, \LuaLaTeX \item [\faFileCode] HTML, CSS, \LuaLaTeX
\item [\faDatabase] SQL \item [\faDatabase] SQL
\item [\faLinux] GNU/Linux, Docker \item [\faLinux] GNU/Linux, Docker
\item [\faGit] Git \item [\faGit] Git
\item [{$\includegraphics[height=10pt]{../img/icons/UML-green.png}$}] UML2 \item [{$\includegraphics[height=10pt]{./img/icons/UML-green.png}$}] UML2
% \item [\faCubes] % \item [\faCubes]
\item [\faFlask] \fboxrule=0pt \item [\faFlask] \fboxrule=0pt
\begin{itemize} \begin{itemize}
\item [{$\includegraphics[height=12pt]{../img/icons/dna-green.png}$}] PCR, RT-PCR, Clonage \item [{$\includegraphics[height=12pt]{./img/icons/dna-green.png}$}] PCR, RT-PCR, Clonage
\item [{$\includegraphics[height=10pt]{../img/icons/spectro-green.png}$}] Spectrophotométrie \item [{$\includegraphics[height=10pt]{./img/icons/spectro-green.png}$}] Spectrophotométrie
\item [{$\includegraphics[height=10pt]{../img/icons/bacille-green.png}$}] Culture microbienne \item [{$\includegraphics[height=10pt]{./img/icons/bacille-green.png}$}] Culture microbienne
\item [{$\includegraphics[height=10pt]{../img/icons/microscope-green.png}$}] Microscopie optique \item [{$\includegraphics[height=10pt]{./img/icons/microscope-green.png}$}] Microscopie optique
\item [{$\includegraphics[height=10pt]{../img/icons/electrophorese-green}$}] Électrophorèse \item [{$\includegraphics[height=10pt]{./img/icons/electrophorese-green}$}] Électrophorèse
\end{itemize} \end{itemize}
\end{ItemList} \end{ItemList}
\vspace{1cm} \vspace{1cm}
@ -131,7 +131,7 @@
%---------------------------------------------------------------------------------------- %----------------------------------------------------------------------------------------
% Picture % Picture
%---------------------------------------------------------------------------------------- %----------------------------------------------------------------------------------------
\DefineProfile{\ColorOther}{\ColorTextSide}{../img/portrait.jpg} \DefineProfile{\ColorOther}{\ColorTextSide}{./img/portrait_sortion_pj-crop.jpeg}
%---------------------------------------------------------------------------------------- %----------------------------------------------------------------------------------------
% Main % Main
@ -141,16 +141,16 @@
%%% Education %%% Education
\MainTitleBis{\ColorHighlight}{\ColorTextMain}{Études}{\faGraduationCap} \MainTitleBis{\ColorHighlight}{\ColorTextMain}{Études}{\faGraduationCap}
% \Experience \Experience
% {\ColorHighlight} {\ColorHighlight}
% {Master \textit{Genomics, Informatics and Mathematics for Health and Environment}} {Master \textit{Genomics, Informatics and Mathematics for Health and Environment}}
% {Université Paris-Saclay} {Université Paris-Saclay}
% {2023-\faUndo} {2023-present}
% { {
% % \begin{itemize} \begin{itemize}
% % \item Master de bioinformatique de l'Université Paris-Saclay. \item Mention du Master de bioinformatique de l'Université Paris-Saclay.
% % \end{itemize} \end{itemize}
% } }
\Experience \Experience
{\ColorHighlight} {\ColorHighlight}
@ -163,22 +163,20 @@
\item Participation au hackathon Digital for Genomics (édition 2023). \item Participation au hackathon Digital for Genomics (édition 2023).
\end{itemize} \end{itemize}
} }
\Experience
{\ColorHighlight}
{Baccalauréat Scientifique, option Sciences de la Vie et de la Terre, mention européenne}
{Lycée Notre-Dame, Le Mans}
{2017-2020}
{
\begin{itemize}
\item Baccalauréat série S - SVT, obtenu avec mention très bien;
\item Mention européenne anglais - SVT, et Participation au \textquote{\href{https://passeportrecherche.univ-nantes.fr/}{Passeport Recherche}};
\item Participation aux \href{https://www.olympiades-chimie.fr/}{Olympiades de la Chimie} (1\textsuperscript{er} aux épreuves départementales sarthoises).
\end{itemize}
}
%%% Experiences %%% Experiences
\MainTitleBis{\ColorHighlight}{\ColorTextMain}{Expériences}{\faSuitcase} \MainTitleBis{\ColorHighlight}{\ColorTextMain}{Expériences}{\faSuitcase}
\Experience
{\ColorHighlight}
{Stage de bioinformatique}
{Institut Pasteur - Régulation Spatiale des Génomes}
{Juillet-Août 2023}
{
\begin{ItemList}{\ColorHighlight}
\item [] Développement d'un script Python visant à éviter un mapping trop lourd des reads de Hi-C sur les génomes contenant des éléments répétés, en se basant sur des annotations des positions d'éléments répétés (\texttt{RepeatMasker}).
\end{ItemList}
}
\Experience \Experience
{\ColorHighlight} {\ColorHighlight}
{Stage de recherche en Neurosciences} {Stage de recherche en Neurosciences}
@ -210,10 +208,10 @@
\item [] Observation des oiseaux et partage des données sur Faune-France; \item [] Observation des oiseaux et partage des données sur Faune-France;
\item [] Enregistrement des chauve-souris; \item [] Enregistrement des chauve-souris;
\item [] \href{https://gallery.samuel.ortion.fr/}{Photographie Naturaliste~\faLink}; \item [] \href{https://gallery.samuel.ortion.fr/}{Photographie Naturaliste~\faLink};
\item [] Développement logiciel et adminsys GNU/Linux; \item [] Développement logiciel et administration systèmes GNU/Linux;
\item [] Groupe d'Utilisateurs des Logiciels Libres \href{https://liness.org/}{Linux Essonnes~\faLink}; \item [] Groupe d'Utilisateurs des Logiciels Libres \href{https://liness.org/}{Linux Essonnes~\faLink};
\item [] Écriture d'articles sur \href{https://bioinfo-fr.net/author/samuel-ortion/}{Bioinfo-fr.net~\faLink}; \item [] Écriture d'articles sur \href{https://bioinfo-fr.net/author/samuel-ortion/}{Bioinfo-fr.net~\faLink};
\item [] Résolutions de problèmes bioinformatiques via \href{https://rosalind.info/users/Samulus.i.n/}{Rosalind.info~{\includegraphics[height=14pt]{../img/icons/rosalind-green.png}}}. \item [] Résolutions de problèmes bioinformatiques sur \href{https://rosalind.info/users/Samulus.i.n/}{Rosalind.info~{\includegraphics[height=14pt]{./img/icons/rosalind-green.png}}}.
\end{ItemList} \end{ItemList}
\end{MainPart} \end{MainPart}

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% source: https://gitlab.com/kroetentunnel/latex-application/-/blob/main/CV-EN.tex?ref_type=heads
\documentclass[10pt, legalpaper]{moderncv}
\usepackage[margin=2.5cm]{geometry}
\moderncvtheme[green]{classic}
\usepackage{fontspec}
\setmainfont{Latin Modern Mono}
\usepackage[scale=0.65]{geometry}
\usepackage{graphicx}
\usepackage[french,english,]{babel}
\usepackage{german}
\usepackage{color}
\usepackage{url}
\usepackage{fancyhdr}
\usepackage{lastpage}
\usepackage{telprint}
\usepackage{luatextra}
\pagestyle{fancy}
%\setlength{\makecvtitlenamewidth}{10cm}
\title{Application to M2 GENIOMHE}
\firstname{Samuel}
\familyname{Ortion}
\address{Appt. B020, 61 Boulevard de L'Yerres}{91000 Évry, France}
\social[github]{samuelortion}
\phone{\telprint{+33 (0) 6 21 58 03 48}}
\email{samuel.ortion@orange.fr}
\homepage{samuel.ortion.fr}
\photo[64pt]{../img/portrait_sortion_pj-crop-redim.jpeg}
\def\todayISO{\the\year-\ifnum\month<10\relax0\fi\the\month-\ifnum\day<10\relax0\fi\the\day}
\begin{document}
%\cfoot{--- \thepage\ of \pageref{LastPage} ---}
%\cfoot{---~\thepage~/~\pageref{LastPage}~---}
\maketitle
\section{personal data}\label{personal-data}
\cvline{birth date}{2003-01-21}
\section{knowledge}\label{knowledge}
\cvline{biology}{molecular biology, genetics, bioinformatics}
\cvline{IT}{git, GNU/Linux, bash, nginx, SQL, Slurm, Docker, QEMU/KVM, \LuaLaTeX}
\cvline{programming}{C/C++, Rust, Python, R, JavaScript, Java, Perl, PHP}
\section{languages}\label{languages}
\cvline{English}{B2 (TOEIC score 870)}
\cvline{German}{A2}
\cvline{French}{native}
\section{internships}\label{internships}
\cventry{july-august 2023} {\href{https://pasteur.fr/}{Institut Pasteur, Regulation Spatiale des Génomes}}{}{Paris}{}{
\begin{itemize}
\item an attempt to avoid a too heavy mapping step on genome with repeats using an approximation based on repeats distribution for Hi-C contact maps reconstruction
\end{itemize}}
\cventry{may-july 2023} {\href{https://www.crnl.fr}{Lyon Neuroscience Research Center}}{}{Lyon}{}{
\begin{itemize}
\item analysis of electrophysiological data from rats learning an odor recognition task
\end{itemize}}
\cventry{january 2022} {\href{https://www.natural-solutions.eu/}{Natural Solutions}}{}{}{}{
\begin{itemize}
\item contribution to the documentation of a deep-learning project aiming to identify nocturnal bird calls
\end{itemize}}
% Education
\section{education}\label{education}
\cventry{2023--present}{Master}{Genomics, Informatics and Mathematics for Health and Environment}{Université Paris-Saclay}{Évry}{}
\cventry{2020--2023}{Bachelor's Degree}{Computer Science and Biology}{Université Paris-Saclay}{Évry}{}{
}
\section{participation}\label{participation}
\cventry{2023}{Hackathon}{Digitals 4 Genomics}{DeepContact team}{}{}
\cventry{2022-2023}{iGEM}{Evry Paris-Saclay}{OptogeneEyeSis}{}{}
% end
\vfill
\textit{\color{gray} last update: \todayISO}
\end{document}

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@ -28,7 +28,7 @@
\usepackage{lipsum} \usepackage{lipsum}
\pagestyle{empty} % No headers or footers \pagestyle{empty} % No headers or footers
\usepackage{moresize} % Provides more font size commands (\HUGE and \ssmall) \usepackage{moresize} % Provides more font size commands (\HUGE and \ssmall)
\usepackage{fontawesome} \usepackage[fixed]{fontawesome5}
\usepackage{ifthen} \usepackage{ifthen}
@ -42,6 +42,7 @@
\definecolor{GreenArmy}{HTML}{252e25} \definecolor{GreenArmy}{HTML}{252e25}
\definecolor{GreenIT}{HTML}{4caf50} \definecolor{GreenIT}{HTML}{4caf50}
%%%%% color macros, use it at the beginning of your cv to quickly use the enterprise colors (Pro HRD tips) %%%%% color macros, use it at the beginning of your cv to quickly use the enterprise colors (Pro HRD tips)
\newcommand{\DefineColorMacros}[5]{% COLORS : TextSide / TextMain / HighLight / Background /Other \newcommand{\DefineColorMacros}[5]{% COLORS : TextSide / TextMain / HighLight / Background /Other
\def\ColorTextSide{#1} \def\ColorTextSide{#1}
@ -70,8 +71,10 @@
% \usepackage[T1]{fontenc} % Output font encoding for international characters % \usepackage[T1]{fontenc} % Output font encoding for international characters
% \usepackage{roboto} % \usepackage{roboto}
\usepackage[scaled]{helvet} % \usepackage[scaled]{helvet}
\renewcommand*\familydefault{\sfdefault} % Force the sans-serif version of any font used \usepackage{fontspec}
\setmainfont{Latin Modern Mono}
% \renewcommand*\familydefault{\sfdefault} % Force the sans-serif version of any font used
%---------------------------------------------------------------------------------------- %----------------------------------------------------------------------------------------
% GEOMETRIE % GEOMETRIE
@ -197,7 +200,7 @@
%%% Name %%% Name
\newcommand{\Name}[4]% Highlight color, Name, Profession, Age \newcommand{\Name}[4]% Highlight color, Name, Profession, Age
{ {
{\HUGE{\textbf{\color{#1}#2}}\\[0.5cm] {\Huge{\textbf{\color{#1}#2}}\\[0.5cm]
\Large{#3} \Large{#3}
\hfill \hfill
\Large{#4}} \Large{#4}}
@ -392,4 +395,4 @@
} }
%% Implements tooltip %% Implements tooltip
\fboxrule=0pt \fboxrule=0pt

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*.log
*.aux
*.bbl
*.blg
*.out
*.toc
*.fls
*.fdb_latexmk
*~
_minted-main
_minted-preamble
*.synctex.gz
*.old

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%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
% MyOwnCV - English version
%
% Author Samuel Ortion
%
% 🄯 2022-2023
% Some right reserved
%
% Version v0.0.6 (2023-09-08)
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
\documentclass[15pt]{mycv}
\usepackage[french]{babel}
\usepackage{datenumber}
\usepackage{fp}
\usepackage{csquotes}
\usepackage{luatextra}
\hypersetup{
pdfauthor={Samuel Ortion},
pdftitle={CV - Samuel Ortion},
pdfsubject={CV},
pdfkeywords={Computer Science, Biology}
}
\begin{document}
\PrintableMode % Make the CV printable
% How old am I at compilation time ?
\newcounter{dateone}%
\newcounter{datetwo}%
\setmydatenumber{dateone}{2003}{01}{21}%
\setmydatenumber{datetwo}{\the\year}{\the\month}{\the\day}%
\FPsub\result{\thedatetwo}{\thedateone}
\FPdiv\myage{\result}{365.2425}
\FPtrunc\myage{\myage}{0}
%----------------------------------------------------------------------------------------
% TOP BAR
%----------------------------------------------------------------------------------------
\begin{TopBar}{\ColorTextSide}
\Name{\ColorHighlight}{\textbf{Samuel Ortion}}{Bioinformatics student}{\myage\ years old}
%%% Contact
\TextSeparator{\ColorHighlight}{Contact}
\begin{DoubleColumns}
\begin{ItemList}{\ColorHighlight}
\item [\faAt]\href{mailto:samuel@ortion.fr}{samuel@ortion.fr}
\item [\faMobile]+33 6 21 58 03 48
\end{ItemList}
\nextcolumn
\begin{ItemList}{\ColorHighlight}
\item [\faMapMarker] Appt. B020 Estudines le Parc \\
61 Bd. de L'Yerres \\
91000 Évry - Courcouronnes
\end{ItemList}
\end{DoubleColumns}
%%% Interests
\TextSeparator{\ColorHighlight}{Interests}
\begin{TripleColumns}
\begin{ItemList}{\ColorHighlight}
\item [] Ornithology
\item [] Bioacoustics
\end{ItemList}
\nextcolumn
\begin{ItemList}{\ColorHighlight}
\item [] Biology
\item [] Evolution
\end{ItemList}
\nextcolumn
\begin{ItemList}{\ColorHighlight}
\item [] Computer Science
\item [] Machine learning
\end{ItemList}
\end{TripleColumns}
\end{TopBar}
%----------------------------------------------------------------------------------------
% SIDE BAR
%----------------------------------------------------------------------------------------
\begin{SideBar}{\ColorBackground}{\ColorTextSide}
%%% Goal
\begin{center}
\Large
\textbf{\textit{Looking for a Computational Biology Internship}} \\
\end{center}
\TextSeparatorBis{\ColorHighlight} {\faLink}{Links}
\begin{ItemList}{\ColorHighlight}
\item [\Large\faGlobe] \href{https://samuel.ortion.fr/}{samuel.ortion.fr}
\item [\Large\faGitlab] \href{https://framagit.org/sortion/}{framagit.org/sortion}
\item [${\includegraphics[height=15pt]{../img/icons/rosalind_logo_green.png}}$] \href{https://rosalind.info/users/Samulus.i.n/}{Samulus.i.n on Rosalind.info}
\end{ItemList}
\vspace{1cm}
%%% Hard skills
\TextSeparatorBis{\ColorHighlight}{\faHammer}{Skills}
\begin{ItemList}{\ColorHighlight}
\item [\faCode] C/C++, Rust, Python, R, shell \\
JS, Java, PHP, OCaml\ldots
\item [\faFileCode] HTML, CSS, \LuaLaTeX
\item [\faDatabase] SQL
\item [\faLinux] GNU/Linux, Docker, Slurm
\item [\faGit*] Git
\item [{$\includegraphics[height=15pt]{../img/icons/UML-green.png}$}] UML2
\item [\faFlask] Basic Laboratory Technics
\begin{ItemList}{\ColorHighlight}
\item [\faDna] PCR, RT-PCR, Cloning
\item [{$\includegraphics[height=15pt]{../img/icons/spectro-green.png}$}] Spectrophotometry
\item [{$\includegraphics[height=15pt]{../img/icons/bacille-green.png}$}] Microrganism culture
\item [{$\includegraphics[height=15pt]{../img/icons/microscope-green.png}$}] Microscopy
\item [{$\includegraphics[height=15pt]{../img/icons/electrophorese-green}$}] Electrophoresis
\end{ItemList}
\end{ItemList}
\vspace{1cm}
%%% Languages
\TextSeparatorBis{\ColorHighlight}{\faLanguage}{Languages}
\begin{ItemList}{\ColorHighlight}
\item [] French (native)
\item [] English (B2, TOEIC Score 870)
\item [] German (A2)
\end{ItemList}
\end{SideBar}
%----------------------------------------------------------------------------------------
% Picture
%----------------------------------------------------------------------------------------
\DefineProfile{\ColorOther}{\ColorTextSide}{../img/portrait_sortion_pj-crop.jpeg}
%----------------------------------------------------------------------------------------
% Main
%----------------------------------------------------------------------------------------
\begin{MainPart}
%%% Education
\MainTitleBis{\ColorHighlight}{\ColorTextMain}{Education}{\faGraduationCap}
\Experience
{\ColorHighlight}
{Master Genomics, Informatics and Mathematics for Health and Environment}
{Université d'Évry val d'Essonne -- Université Paris-Saclay}
{2023-present}
{
}
\Experience
{\ColorHighlight}
{\href{https://www.universite-paris-saclay.fr/formation/licence-double-diplome/informatique-sciences-de-la-vie/}
{Bachelor's Degree in Computer Science and Biology}
}
{Université d'Évry val d'Essonne -- Université Paris-Saclay}
{ \hfill 2020-2023}
{
\begin{ItemList}{\ColorHighlight}
\item [] Participation to the Digital for Genomics Hackathon 2023 at Évry Genopole with the \textit{DeepContact} Team (Institut Pasteur).
\item [] A bit of bioinformatics with the iGEM 2023 Évry - Paris-Saclay Team.
\end{ItemList}
}
%%% Experiences
\MainTitleBis{\ColorHighlight}{\ColorTextMain}{Work Experiences}{\faSuitcase}
\Experience
{\ColorHighlight}
{Bioinformatics Internship}
{Institut Pasteur - Spatial Regulation of Genomes}
{July-August 2023}
{
\begin{ItemList}{\ColorHighlight}
\item [] Development of a Python script attempting to shortcut the too heavy
Hi-C reads mapping (\texttt{bowtie2}) on genomes with numerous repeated sequences, with a rough approximation based on previously annotated repeats positions (\texttt{RepeatMasker}).
\end{ItemList}
}
\Experience
{\ColorHighlight}
{Neurosciences Internship}
{Lyon Neurosciences Research Center}
{May-July 2023}
{
\begin{ItemList}{\ColorHighlight}
\item [] Electrophysiological signals analysis in rats (LFP and respiration);
\item [] Signal processing with Python libraries.
\end{ItemList}
}
\Experience
{\ColorHighlight}
{Computer Science Intership}
{\href{https://www.natural-solutions.eu/}{Natural-Solutions}}
{January 2022}
{
\begin{ItemList}{\ColorHighlight}
\item [] Contribution to a deep learning project aiming at automatic detection and identification of nocturnal bird flight calls: \href{https://nocturnal-bird-migration.com/}{NBM Challenge}.
\end{ItemList}
}
%%% Activities
\MainTitleBis{\ColorHighlight}{\ColorTextMain}{Activities}{\faUsers}
\vspace{0.5cm}
\begin{DoubleColumns}
\begin{ItemList}{\ColorHighlight}
\item [] Bird watching;
\item [] Bat recording (Vigie-Chiro);
\item [] \href{https://gallery.samuel.ortion.fr/}{Wildlife Photography};
\end{ItemList}
\nextcolumn
\begin{ItemList}{\ColorHighlight}
\item [] Software development;
\item [] \href{https://liness.org/}{Liness Linux User Group};
\item [] Wrote on \href{https://bioinfo-fr.net/author/samuel-ortion}{bioinfo-fr.net} blog.
\end{ItemList}
\end{DoubleColumns}
\end{MainPart}
\end{document}

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