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72a638cd17
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Added conference date to Nickel contract + artifacts (close #29). Changes localhost to 127.0.0.1 in test artifact, because localhost doesn't work in a Nix environment.
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2024-08-20 17:44:41 +02:00 |
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0a8b0c85c6
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Fixed analysis part in Snakemake again, needs testing. Moved test and template artifacts back to parent folder. Changes analysis output dir.
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2024-08-19 19:02:23 +02:00 |
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ece5749b7a
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Fixed analysis in Snakefile. Started working on plotting part.
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2024-08-19 16:37:51 +02:00 |
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f6f20cb0d6
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Integrated the whole analysis part to the Snakefile, but needs testing (#44).
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2024-08-19 15:21:28 +02:00 |
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e943be4efe
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Integrated softenv analysis to workflow. Changed input and output cmd options in analysis scripts to take multiple files at once. Moved test and template artifacts in an excluded folder.
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2024-08-19 14:59:08 +02:00 |
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1e5dd77cd8
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Working on the integration of the analysis to the snakemake workflow.
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2024-08-16 17:41:20 +02:00 |
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0bbed9d0f5
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Adding missing changes from the previous commit because I wasn't in the root folder...
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2024-08-15 12:23:34 +02:00 |
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74228cd1c5
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Now optional with a default value in the Nickel contract: version, comment, git_packages, misc_packages, python_venvs (close #30).
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2024-08-06 11:44:38 +02:00 |
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114d0e5816
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Added support for other virtualization techs in the Nickel contract (close #28). Added Nix dependency for Snakemake diagram generation.
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2024-07-30 18:06:16 +02:00 |
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ff2fc2d365
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Added version number to the Nickel contracts and artifacts (close #27).
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2024-07-29 16:39:30 +02:00 |
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e8b25b74a7
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Added build status analysis. Now logging build status even if build is successful, to make analysis easier (as mentionned in #26). Added a new error type.
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2024-07-26 19:00:25 +02:00 |
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48d3da9c7d
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Removed image name from the config file, now generated from the artifact URL (close #24). Fixed the "--no-cache" option when using Docker cache.
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2024-07-24 18:58:50 +02:00 |
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d2768d5373
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Added initial support for Python venvs, close #21. Disabled the Docker build cache by default, and added an option to reenable it, close #23. Removed conditions on the existance of git_packages and misc_packages, because the workflow enforces their existance with the Nickel artifact contract.
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2024-07-24 18:05:31 +02:00 |
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4329e333ea
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Added shi_welder, renamed OAR timeout error.
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2024-07-24 10:13:53 +02:00 |
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687b777912
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Merge remote-tracking branch 'origin/workflow_config'
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2024-07-23 17:26:03 +02:00 |
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Quentin Guilloteau
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944b1bf6f9
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checkpoint in case of reaching walltime
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2024-07-21 17:32:04 +02:00 |
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Quentin Guilloteau
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566eb778f2
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fix execution on grid5000 from namespace
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2024-07-21 16:13:52 +02:00 |
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Quentin Guilloteau
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318955865c
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typo
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2024-07-21 16:12:40 +02:00 |
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Quentin Guilloteau
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8ed548c435
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first try for g5k execution
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2024-07-20 15:41:56 +02:00 |
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cc605943a9
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Added a comment section for artifacts configuration. Moved hints to the Nickel contract.
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2024-07-19 17:05:46 +02:00 |
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Quentin Guilloteau
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9769f6b533
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Add config for snakemake
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2024-07-19 16:33:27 +02:00 |
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a7bf9cee94
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Written a doc for the output. Removed the "type" attribute from the Nickel contract, closing #17.
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2024-07-19 16:18:49 +02:00 |
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d791064183
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Added Nickel constraint on values.
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2024-07-17 14:56:38 +02:00 |
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1aaa77cba3
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Fixed Nickel contract and check files. Fixed input/output files in Snakefile.
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2024-07-16 17:35:09 +02:00 |
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69e447ab0a
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Fixed Nickel config files. Added artifact hash log on Snakefile + modified some variables names. Switched from 'tgz' to 'tar' for archive type.
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2024-07-16 16:47:17 +02:00 |
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Quentin Guilloteau
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4432a93123
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integrate nickel in workflow
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2024-07-16 13:59:44 +02:00 |
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Quentin Guilloteau
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28126f8b3e
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basic workflow for ecg
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2024-07-11 15:17:16 +02:00 |
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Quentin Guilloteau
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3737dd29e6
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add start of workflow to extract non blacklisted artifacts
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2024-07-11 13:37:07 +02:00 |
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