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9c6fe6700b
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The updating of the blacklist has been reworked to be functional: it is not relying on a symlink anymore (this symlink has been removed). Instead, the last blacklist is fetched by the get_artifacts_to_build function. Modified Snakefile according to the change in the name of a build status. Created a default config file for Snakemake, allowing custom configurations to be written to "config.yaml".
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2024-08-20 18:55:12 +02:00 |
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0a8b0c85c6
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Fixed analysis part in Snakemake again, needs testing. Moved test and template artifacts back to parent folder. Changes analysis output dir.
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2024-08-19 19:02:23 +02:00 |
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ece5749b7a
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Fixed analysis in Snakefile. Started working on plotting part.
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2024-08-19 16:37:51 +02:00 |
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f6f20cb0d6
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Integrated the whole analysis part to the Snakefile, but needs testing (#44).
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2024-08-19 15:21:28 +02:00 |
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e943be4efe
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Integrated softenv analysis to workflow. Changed input and output cmd options in analysis scripts to take multiple files at once. Moved test and template artifacts in an excluded folder.
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2024-08-19 14:59:08 +02:00 |
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1e5dd77cd8
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Working on the integration of the analysis to the snakemake workflow.
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2024-08-16 17:41:20 +02:00 |
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0bbed9d0f5
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Adding missing changes from the previous commit because I wasn't in the root folder...
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2024-08-15 12:23:34 +02:00 |
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e8b25b74a7
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Added build status analysis. Now logging build status even if build is successful, to make analysis easier (as mentionned in #26). Added a new error type.
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2024-07-26 19:00:25 +02:00 |
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Quentin Guilloteau
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944b1bf6f9
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checkpoint in case of reaching walltime
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2024-07-21 17:32:04 +02:00 |
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Quentin Guilloteau
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566eb778f2
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fix execution on grid5000 from namespace
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2024-07-21 16:13:52 +02:00 |
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Quentin Guilloteau
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8ed548c435
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first try for g5k execution
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2024-07-20 15:41:56 +02:00 |
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Quentin Guilloteau
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9769f6b533
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Add config for snakemake
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2024-07-19 16:33:27 +02:00 |
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1aaa77cba3
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Fixed Nickel contract and check files. Fixed input/output files in Snakefile.
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2024-07-16 17:35:09 +02:00 |
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69e447ab0a
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Fixed Nickel config files. Added artifact hash log on Snakefile + modified some variables names. Switched from 'tgz' to 'tar' for archive type.
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2024-07-16 16:47:17 +02:00 |
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Quentin Guilloteau
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4432a93123
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integrate nickel in workflow
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2024-07-16 13:59:44 +02:00 |
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Quentin Guilloteau
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28126f8b3e
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basic workflow for ecg
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2024-07-11 15:17:16 +02:00 |
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