|
|
ece5749b7a
|
Fixed analysis in Snakefile. Started working on plotting part.
|
2024-08-19 16:37:51 +02:00 |
|
|
|
f6f20cb0d6
|
Integrated the whole analysis part to the Snakefile, but needs testing (#44).
|
2024-08-19 15:21:28 +02:00 |
|
|
|
e943be4efe
|
Integrated softenv analysis to workflow. Changed input and output cmd options in analysis scripts to take multiple files at once. Moved test and template artifacts in an excluded folder.
|
2024-08-19 14:59:08 +02:00 |
|
|
|
1e5dd77cd8
|
Working on the integration of the analysis to the snakemake workflow.
|
2024-08-16 17:41:20 +02:00 |
|
|
|
0bbed9d0f5
|
Adding missing changes from the previous commit because I wasn't in the root folder...
|
2024-08-15 12:23:34 +02:00 |
|
|
|
74228cd1c5
|
Now optional with a default value in the Nickel contract: version, comment, git_packages, misc_packages, python_venvs (close #30).
|
2024-08-06 11:44:38 +02:00 |
|
|
|
114d0e5816
|
Added support for other virtualization techs in the Nickel contract (close #28). Added Nix dependency for Snakemake diagram generation.
|
2024-07-30 18:06:16 +02:00 |
|
|
|
ff2fc2d365
|
Added version number to the Nickel contracts and artifacts (close #27).
|
2024-07-29 16:39:30 +02:00 |
|
|
|
e8b25b74a7
|
Added build status analysis. Now logging build status even if build is successful, to make analysis easier (as mentionned in #26). Added a new error type.
|
2024-07-26 19:00:25 +02:00 |
|
|
|
48d3da9c7d
|
Removed image name from the config file, now generated from the artifact URL (close #24). Fixed the "--no-cache" option when using Docker cache.
|
2024-07-24 18:58:50 +02:00 |
|
|
|
d2768d5373
|
Added initial support for Python venvs, close #21. Disabled the Docker build cache by default, and added an option to reenable it, close #23. Removed conditions on the existance of git_packages and misc_packages, because the workflow enforces their existance with the Nickel artifact contract.
|
2024-07-24 18:05:31 +02:00 |
|
|
|
4329e333ea
|
Added shi_welder, renamed OAR timeout error.
|
2024-07-24 10:13:53 +02:00 |
|
|
|
687b777912
|
Merge remote-tracking branch 'origin/workflow_config'
|
2024-07-23 17:26:03 +02:00 |
|
Quentin Guilloteau
|
944b1bf6f9
|
checkpoint in case of reaching walltime
|
2024-07-21 17:32:04 +02:00 |
|
Quentin Guilloteau
|
566eb778f2
|
fix execution on grid5000 from namespace
|
2024-07-21 16:13:52 +02:00 |
|
Quentin Guilloteau
|
318955865c
|
typo
|
2024-07-21 16:12:40 +02:00 |
|
Quentin Guilloteau
|
8ed548c435
|
first try for g5k execution
|
2024-07-20 15:41:56 +02:00 |
|
|
|
cc605943a9
|
Added a comment section for artifacts configuration. Moved hints to the Nickel contract.
|
2024-07-19 17:05:46 +02:00 |
|
Quentin Guilloteau
|
9769f6b533
|
Add config for snakemake
|
2024-07-19 16:33:27 +02:00 |
|
|
|
a7bf9cee94
|
Written a doc for the output. Removed the "type" attribute from the Nickel contract, closing #17.
|
2024-07-19 16:18:49 +02:00 |
|
|
|
d791064183
|
Added Nickel constraint on values.
|
2024-07-17 14:56:38 +02:00 |
|
|
|
1aaa77cba3
|
Fixed Nickel contract and check files. Fixed input/output files in Snakefile.
|
2024-07-16 17:35:09 +02:00 |
|
|
|
69e447ab0a
|
Fixed Nickel config files. Added artifact hash log on Snakefile + modified some variables names. Switched from 'tgz' to 'tar' for archive type.
|
2024-07-16 16:47:17 +02:00 |
|
Quentin Guilloteau
|
4432a93123
|
integrate nickel in workflow
|
2024-07-16 13:59:44 +02:00 |
|
Quentin Guilloteau
|
28126f8b3e
|
basic workflow for ecg
|
2024-07-11 15:17:16 +02:00 |
|
Quentin Guilloteau
|
3737dd29e6
|
add start of workflow to extract non blacklisted artifacts
|
2024-07-11 13:37:07 +02:00 |
|
